View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17031_low_2 (Length: 851)
Name: NF17031_low_2
Description: NF17031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17031_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-166; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 14 - 340
Target Start/End: Original strand, 1364012 - 1364337
Alignment:
| Q |
14 |
cacagagggcaatgagaatagaaagtgcatgacggtctaaacccgtgtcgagtatattggacatgtgaaatgccaggtccaaagattctcgtgcacttct |
113 |
Q |
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| T |
1364012 |
cacagagggcaatgagaatagaaagtgcatgacggtctaaacccgtgtcgagtatattggacatgtgaaatgccaggtccaaagattctcgtgcacttct |
1364111 |
T |
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| Q |
114 |
ggcagcttctggatccatgcttaaagctgagatgtgaataagatgtttaccgatcagaattgcgnnnnnnntaaacaactaaacacaagttaaaattacc |
213 |
Q |
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| T |
1364112 |
ggcagcttctggatccatgcttaaagctgagatgtgaataagatgtttaccgatcagaattgcg-aataaataaacaactaaacacaagttaaaattacc |
1364210 |
T |
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| Q |
214 |
ctgcaaactactgtctgaaacctatagtcaaatgttttaaaaatgggagcgaaagttgaactggcgagacccctattcgatgaatataatgctaaacttc |
313 |
Q |
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| T |
1364211 |
ctgcaaactactgtctgaaacctatagtcaaatgttttaaaaatgggagcgaaagttgaactggcgagacccctattcgatgaatataatgctaaacttc |
1364310 |
T |
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| Q |
314 |
atgataactgatgcacggtgataactt |
340 |
Q |
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| T |
1364311 |
atgataactgatgcactgtgataactt |
1364337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 407 - 618
Target Start/End: Original strand, 1364404 - 1364615
Alignment:
| Q |
407 |
gataagtcttcctaatatatattaaaacatcaaatctcatgtggatcatacaatcaactatgggtgtctggtggatcaagtggaccaatatcaccacttc |
506 |
Q |
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| T |
1364404 |
gataagtcttcctaatatatattaaaacatcaaatctcatgtggatcatacaatcaactatgggtgcctggtggatcaagtggaccaatatcaccacttc |
1364503 |
T |
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| Q |
507 |
aaataacacaacaggatcaatgaaaaatttgatatgaataggaagaacaaaaaacacagtaaggtcacaaacttcatacaacagaaactaagtcaactaa |
606 |
Q |
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| T |
1364504 |
aaataacacaacaggatcaatgaaaaatttgatatgaataggaagaacaaaaaacacagtaaggtcacaaacttcatacaacataaactaagtcaactaa |
1364603 |
T |
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| Q |
607 |
caaagaggattg |
618 |
Q |
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| T |
1364604 |
caaagagtattg |
1364615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 656 - 836
Target Start/End: Original strand, 1365084 - 1365264
Alignment:
| Q |
656 |
cctaaaagtcttcctaattgccttacgtgagagattccgttgataccactggttttccaatatggatcacataattaggtgtcgccaaaagaataacatg |
755 |
Q |
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| T |
1365084 |
cctaaaagtcttcctaattgccttatgtgagagattccgttgataccactggttttccaatatggatcacataattaggtgtcgccaaaagaataacatg |
1365183 |
T |
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| Q |
756 |
tgcaatttgattgataaaacatgttaggcaaactactattttaaaaattgatttggttatttataataaaatgtgatgatg |
836 |
Q |
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| T |
1365184 |
tgcaatttgattgataaaacatgttaggcaaactactattttaaaaattgatttggttatttataataaaatgtgatgatg |
1365264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 51222836 - 51222701
Alignment:
| Q |
14 |
cacagagggcaatgagaatagaaagtgcatgacggtctaaacccgtgtcgagtatattggacatgtgaaatgccaggtccaaagattctcgtgcacttct |
113 |
Q |
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| T |
51222836 |
cacagagggcaatgagaatagaaagtgcatgacggtctaaacccgtgtcgagtatattggacatgtgaaatgccaggtccaaagattctcgtgcacttct |
51222737 |
T |
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| Q |
114 |
ggcagcttctggatccatgcttaaagctgagatgtg |
149 |
Q |
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| T |
51222736 |
tgcagcttcaggatccatgcttaaagctgagatgtg |
51222701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 620 - 702
Target Start/End: Complemental strand, 8023266 - 8023183
Alignment:
| Q |
620 |
caattgcctcttggaatcggactagagtcccattttcctaaaagtcttcctaa-ttgccttacgtgagagattccgttgatacc |
702 |
Q |
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| T |
8023266 |
caattgcctcttggaattggacttgagtctcatttccctaatagtcctcctaacttgccttacatgagagcttcccttgatacc |
8023183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 619 - 688
Target Start/End: Complemental strand, 21543563 - 21543493
Alignment:
| Q |
619 |
gcaattgcctcttggaatcggactagagtcccattttcctaaaagtcttcctaa-ttgccttacgtgagag |
688 |
Q |
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| T |
21543563 |
gcaattgcctcttggaattggactcgagtctcattttcctaattttcctcctaacttgccttacatgagag |
21543493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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