View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17031_low_20 (Length: 260)
Name: NF17031_low_20
Description: NF17031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17031_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 1242140 - 1242269
Alignment:
| Q |
77 |
aaatgtgagaaagcatgccataaatttcatgatgagaacccaagcattttgcaaaggatagaaagatgtgcatcttttgtgtatttcaagctcggtttct |
176 |
Q |
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| T |
1242140 |
aaatgtgagaaagcatgccataaatttcatga---gaacccaagcattttgcaaaggatagaaagatgtgcatcttttgtgtatttcatgctcggtttct |
1242236 |
T |
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| Q |
177 |
aaatttagttttatgagatttccaataacacta |
209 |
Q |
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| T |
1242237 |
aaatttagttttatgagatttccaataacacta |
1242269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 1242107 - 1242143
Alignment:
| Q |
15 |
ggccaaggaaaaatgtaaaaagacatgaaacataaat |
51 |
Q |
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| T |
1242107 |
ggccaaggaaaaatgtaaaaagacatgaaacataaat |
1242143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 1242287 - 1242324
Alignment:
| Q |
209 |
accctagagaagcatcttattaaggatagaacatattg |
246 |
Q |
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| T |
1242287 |
accctagagaagcatcttattaaggatagaacaaattg |
1242324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 472729 - 472822
Alignment:
| Q |
116 |
ccaagcattttgcaaaggatagaaagatgtgcatcttttgtgtatttcaagctcggtttctaaatttagttttatgagatttccaataacacta |
209 |
Q |
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| T |
472729 |
ccaagcattttgcgaataatagaaagatgtgcatcttttgtgcatttcatgctcggtttctaaatttagttttatgagatttccaataacacta |
472822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 472671 - 472715
Alignment:
| Q |
19 |
aaggaaaaatgtaaaaagacatgaaacataaataactgtatagaa |
63 |
Q |
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| T |
472671 |
aaggaaaaatgtaaaaagacatgaaaaataaataaccgtatagaa |
472715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 41521871 - 41521789
Alignment:
| Q |
116 |
ccaagcattttgcaaaggatagaaagatgtgcatcttttgtgtatttcaagctcggtttctaaatttagttttatgagatttccaataacacta |
209 |
Q |
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| T |
41521871 |
ccaagcattttgcgaaggatagaaagatgtgc-----------atttcatgctcggtttctaaatttagttttatgagatttccattaacacta |
41521789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 41521944 - 41521883
Alignment:
| Q |
19 |
aaggaaaaatgtaaaaagacatgaaacataaataactgtatagaacctagtactattgaaat |
80 |
Q |
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| T |
41521944 |
aaggaaaaatgtcaaaagacatgaaaaataaataaccgtatagaaccaagtaccattgaaat |
41521883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 41521844 - 41521734
Alignment:
| Q |
154 |
tgtgtatttcaagctcggtttctaaatttagttttatgagatttccaataacacta------------------ccctagagaagcatcttattaaggat |
235 |
Q |
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| T |
41521844 |
tgtgcatttcatgctcggtttctaaatttagttttatgagatttccattaacactattttaaaaatagcaaaaaccctagagaagcatcttattaaggat |
41521745 |
T |
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| Q |
236 |
agaacatattg |
246 |
Q |
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| T |
41521744 |
ataacatattg |
41521734 |
T |
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