View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17031_low_24 (Length: 235)
Name: NF17031_low_24
Description: NF17031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17031_low_24 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 225379 - 225613
Alignment:
| Q |
1 |
atgccataccaatcatggttccgtgaagtattccaccatgaggaggcataatcgaaagttgaagctgctctttcaaaaacagataactgtgcccaacaat |
100 |
Q |
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| T |
225379 |
atgccataccaatcatggttccgtgaagtattccaccatgaggaggcataatcgaaagttgaagctgctctttcaaaaacagataactgtgcccaacaat |
225478 |
T |
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| Q |
101 |
ctcatccacttgtatatcaggatcagaagcaaatatttgttgacttatatgtaaggccatgaatctcctgaaatcattagcatacaacatcaatttgtga |
200 |
Q |
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| T |
225479 |
ttcatccacttgtatatcaggatcagaagcaaatatttgttgacttatatgtaaggccatgaatctcctgaaatcattagcatacaacatcaatttgtga |
225578 |
T |
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| Q |
201 |
aacattaatataattataaactataaactacatac |
235 |
Q |
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| T |
225579 |
aacattaatataattataaactataaactatatac |
225613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 233108 - 233190
Alignment:
| Q |
130 |
caaatatttgttgacttatatgtaaggccatgaatctcctgaaatcattagcatacaacatcaatttgtgaaacattaatata |
212 |
Q |
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| T |
233108 |
caaataattgttgatttatatgtatggtcatgaatatcctgaaattattaacatacaatatcaatttgtgaaacactaatata |
233190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 233036 - 233070
Alignment:
| Q |
8 |
accaatcatggttccgtgaagtattccaccatgag |
42 |
Q |
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| T |
233036 |
accaatcatggttccgtgaagtattccactatgag |
233070 |
T |
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