View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17031_low_26 (Length: 221)
Name: NF17031_low_26
Description: NF17031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17031_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 225590 - 225788
Alignment:
| Q |
16 |
aattataaactataaactacatacaatccgaaccagaatcctgattgtaacaatctttgatcaagttttacttaccttctggctaaacctggaggaatag |
115 |
Q |
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| T |
225590 |
aattataaactataaactatatacaatccgaactagaatcctgattgtaacaatctttgatcaagttttacttaccttctggctaaacctggaggaatag |
225689 |
T |
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| Q |
116 |
gtccaggccaagtttgagaaggattggtgaatggatagatgtgagaaagagcagcttgccaaaaacattcagttcgaaaaagagatgccctatgcttct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
225690 |
gtccaggccaagtttgagaaggattggtgaatggatagatgtgagaaagagcagcttgccaaaaacattcagttcggaaaagagatgcccactgcttct |
225788 |
T |
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Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 233190 - 233379
Alignment:
| Q |
24 |
actataaactacatacaatccgaaccagaatcctgattgtaacaatctttgatcaagttttacttaccttctggctaaacctggaggaataggtccaggc |
123 |
Q |
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||||||||||||||| |||| |||| ||||||||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |||| |
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| T |
233190 |
actataaactacatagaatcagaactcaaatcctgatagtaacaatctta-atcaagttttacttactttctgactaaacctggaggaataggtctaggc |
233288 |
T |
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| Q |
124 |
caagtttgagaaggattggtgaatggatagatgtgagaaagagcagcttgccaaaaacattcagttcgaaaaagagatgccctatgcttct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
233289 |
caagtttgagaaggattggtgaatggatagatgtgagaaagagcagcttgccaaaaacattcagttcgaaaaagagatgcccactgcttct |
233379 |
T |
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