View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17031_low_27 (Length: 218)
Name: NF17031_low_27
Description: NF17031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17031_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 7223673 - 7223481
Alignment:
| Q |
8 |
aggagcagagagaattacattatttcctcggtcttcaaatcacacgcaccagttctggggtacaactcactcaagaaggttatgttagagatattctgga |
107 |
Q |
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|||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7223673 |
aggatcagggagaattgcattatttcctcggtcttcaaatcacacgcaccagttctggggtacaactcactcaagaaggttatgttagagatattctgga |
7223574 |
T |
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| Q |
108 |
gtccaccaacatgtctgctgctgctcctataacaacacctgctgacccacagcatcgtctagtcaaagcgagtgaaccattcgatgatccagc |
200 |
Q |
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| T |
7223573 |
gtccaccaacatgtctgctgctgctcctataacaacacctgctgacccacatcatcgtctagtcaaagcgggtgaaccattcgatgatccagc |
7223481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 42606736 - 42606544
Alignment:
| Q |
8 |
aggagcagagagaattacattatttcctcggtcttcaaatcacacgcaccagttctggggtacaactcactcaagaaggttatgttagagatattctgga |
107 |
Q |
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|||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42606736 |
aggatcagggagaattgcattatttcctcggtcttcaaatcacacgcaccagttctggggtgcaactcactcaagaaggttatgttagagatattctgga |
42606637 |
T |
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| Q |
108 |
gtccaccaacatgtctgctgctgctcctataacaacacctgctgacccacagcatcgtctagtcaaagcgagtgaaccattcgatgatccagc |
200 |
Q |
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| T |
42606636 |
gtccaccaacatgtctgctgctgctcctataacaacacctgctgatccgcagcatcgtctagtcaaagcgggtgaaccattcgatgatccagc |
42606544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 27722609 - 27722417
Alignment:
| Q |
8 |
aggagcagagagaattacattatttcctcggtcttcaaatcacacgcaccagttctggggtacaactcactcaagaaggttatgttagagatattctgga |
107 |
Q |
| |
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|||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27722609 |
aggatcagggagaattgcattatttcctcggtcttcaaatcacacgcaccagttctggggtgcaactcactcaagaaggttatgttagagatattctgga |
27722510 |
T |
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| Q |
108 |
gtccaccaacatgtctgctgctgctcctataacaacacctgctgacccacagcatcgtctagtcaaagcgagtgaaccattcgatgatccagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
27722509 |
gtccaccaacatgtctgctgctgctcctataacaacacctgctgatccgcagcatcgtctagtcaaagcgggtgaaccattcaatgatccagc |
27722417 |
T |
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