View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17031_low_29 (Length: 208)
Name: NF17031_low_29
Description: NF17031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17031_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 42991666 - 42991621
Alignment:
| Q |
142 |
ccttgaacgcctacactcagcaggaataccttgtggaaatcgctta |
187 |
Q |
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| T |
42991666 |
ccttgaacgcctacactcagcaggaataccttgtggaaatcgctta |
42991621 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 42993651 - 42993585
Alignment:
| Q |
10 |
ccaaaaatatacagaggaagatagtaaatcaaagaatcataataataaattaaaacaacggcaaacaaat |
79 |
Q |
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| T |
42993651 |
ccaaaaaaatacagaggaagatagtaaatcaaagaatcata---ataaattaaaacaacaacaaacaaat |
42993585 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 38213792 - 38213882
Alignment:
| Q |
104 |
taagatggctattatacgttcttcatcat------ctc-tcagaaccttgaacgcctacactcagcaggaataccttgtggaaatcgctta |
187 |
Q |
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| T |
38213792 |
taagatggctattatatgttcttcatcattgatctctcatcagaaccttggacgcttacactcagcaggaataccttctgggaatcgctta |
38213882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 38218011 - 38218101
Alignment:
| Q |
104 |
taagatggctattatacgttcttcatcat------ctc-tcagaaccttgaacgcctacactcagcaggaataccttgtggaaatcgctta |
187 |
Q |
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|||||||||||||||| |||||||||||| ||| ||||||||||| |||| ||||||||||||||||||||| ||| ||||||||| |
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| T |
38218011 |
taagatggctattatatgttcttcatcattgatctctcatcagaaccttggacgcttacactcagcaggaataccttctgggaatcgctta |
38218101 |
T |
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