View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17031_low_7 (Length: 469)
Name: NF17031_low_7
Description: NF17031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17031_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 34986581 - 34986371
Alignment:
| Q |
15 |
catagggttcatatttttcgcaagttgagtttagataggcttttgcctaggtcaacctaagccctaggagggccataatagatgttggtgttcattggtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34986581 |
catagggttcatatttttcgcaagttgagtttagataggcttttgcctaggtcaacctaagccctaggagggccataatagatgttggtgttcattggtg |
34986482 |
T |
|
| Q |
115 |
tcttctgtgaggattttcaagagtcaatggtcttagatgagtttgggaaacgattatgtttatcaaaatgatatttattatcttaaatattcctctactt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34986481 |
tcttctgtgaggattttcaagagtcaatggtcttagatgagtttgggaaacgattatgtttatcaaaatgatatttattatcttaaatattcctctactt |
34986382 |
T |
|
| Q |
215 |
ttaagttatcc |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
34986381 |
ttaagttatcc |
34986371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 264 - 453
Target Start/End: Complemental strand, 34986332 - 34986143
Alignment:
| Q |
264 |
catacctccagcatctgcaataagttttggagccttcagtgtttcagaccactcaatgtatcggacaatggaagttagccaacgtgtcgcaccaaaagcc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34986332 |
catacctccagcatctgcaataagttttggagccttcagtgtttcagaccactcaatgtatcggacaatggaagttagccaacgtgttgcaccaaaagcc |
34986233 |
T |
|
| Q |
364 |
aaagctgaggtaactaatggcctaaaaagatcactcaatttactatagtctgcttccacgtgctccaaccatataacctaaggtaattaa |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34986232 |
aaagctgaggtaactaatggcctaaaaagatcactcaatttactatagtctgcttccacgtgctccaaccatataacctaaggtaattaa |
34986143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 266 - 452
Target Start/End: Complemental strand, 34994705 - 34994519
Alignment:
| Q |
266 |
tacctccagcatctgcaataagttttggagccttcagtgtttcagaccactcaatgtatcggacaatggaagttagccaacgtgtcgcaccaaaagccaa |
365 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
34994705 |
tacctcgagcatctgcaataagttttgttgcattcagtgtttcagaccactcaatgtgctggacaatggaagcaagccagcgtggcgcaccaaaagccaa |
34994606 |
T |
|
| Q |
366 |
agctgaggtaactaatggcctaaaaagatcactcaatttactatagtctgcttccacgtgctccaaccatataacctaaggtaatta |
452 |
Q |
| |
|
| | |||||||| |||| | |||||||| || |||||| ||||| ||||||| | || ||||||| ||||||||||||| ||||||| |
|
|
| T |
34994605 |
accagaggtaacaaatgtcttaaaaagaccattcaattgactatggtctgctactacatgctccacccatataacctaatgtaatta |
34994519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University