View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17031_low_8 (Length: 460)
Name: NF17031_low_8
Description: NF17031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17031_low_8 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 16 - 460
Target Start/End: Complemental strand, 55003473 - 55003020
Alignment:
| Q |
16 |
atccaatcctttcacgagtttcnnnnnnncattggaagaaaatttaggtaagaggcttccgagaacgttctccatctctttagggtatttaccaaatatg |
115 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55003473 |
atccaatcctttcatgagtttctttttttcattggaagaaaatttaggtaagaggcttccaagaacgttctccatctctttagggtatttaccaaatatg |
55003374 |
T |
|
| Q |
116 |
attgggtccaaaatcctgtatttttatttgagtatatttacactatgaggctctcatctttatacttcgagtgaatcaatagaaaaagctactatattag |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
55003373 |
attgggtccaaaatcctgtatttttatttgagtatatttacactatgaggctctcatctttatactttgagtgaatcaatagaaaaagctactatattag |
55003274 |
T |
|
| Q |
216 |
tatttaaaggagaattataccaattgaaggtgaatgatcttgctctttcagcagccaatttgtcagcagtagagttgctcattggttcataccattcata |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
55003273 |
tatttaaaggagaattataccaattgaaggtgaatgatcttgctctttcagcagccaatttgtcagcattagagttgctcattggttcataccattcatg |
55003174 |
T |
|
| Q |
316 |
tgaaatcactattccaattcttcctttctgctcagcctgatatgtttcacttttaaaatacgatgttttacaatc---------aaataactataattcg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
55003173 |
tgaaatcactattccaattcttcctttctgctcagcctgatatgtttcacttttaaaatacgatgttttacaatcaaatcaatcaaataactataattcg |
55003074 |
T |
|
| Q |
407 |
tatgatttgagaaatctatcaagtcgatcagcaagaaaatacaagttgacattg |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55003073 |
tatgatttgagaaatctatcaagtcgatcagcaagaaaatacaagttgacattg |
55003020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University