View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17031_low_9 (Length: 422)
Name: NF17031_low_9
Description: NF17031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17031_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 37141348 - 37140954
Alignment:
| Q |
19 |
agctatgacaatggaatttgaccacgtagatatccgtctgaacccgccaattttgacagggaaaa-acattccaatgcacaaatttggatacaacgtaga |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| |
|
|
| T |
37141348 |
agctatgacaatggaattcgaccacgtagatatccgtttgaacccgccaattttgacagggaaaacacattccattgcacaaatttggattcaacgtaga |
37141249 |
T |
|
| Q |
118 |
atcataatagctagtattacctttatcccagcaaacgtctttctagcttcaaaattattcttattttaaatcctggtgtgaactatgtcggtccttaatc |
217 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||| |||||||||| || |||||||| ||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
37141248 |
atcagaatagcttgtattacctttatcccagcaaacatctttctagcatcgcaattattcctattttaaatcctagtctgaacaatgtcggtccttaatc |
37141149 |
T |
|
| Q |
218 |
gaataaaaccgacgttagtctaaatggaacaaaagggtttgggatgacatgacaacaaattgttctattattgtccataaaagcaattttttcactttca |
317 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37141148 |
gaattaaaccgacgttagtctagatggaacaaaagggtttgggatgacatgacaacaaattgttgtattattgtccataaaagcaattttttcactttca |
37141049 |
T |
|
| Q |
318 |
gcttcacctcttgctctaactacctttcctacagaataagttacacccaattgtaattatttacttgcatactttttaatcaatgtgaacctatg |
412 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||| || |||||| || |||||||||| ||||||||||||||||||||||| |
|
|
| T |
37141048 |
gcttcacctcttgctctaactaccattcctacacaataagttacactcatttgtaacaatctacttgcatattttttaatcaatgtgaacctatg |
37140954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 412
Target Start/End: Complemental strand, 44586459 - 44586378
Alignment:
| Q |
331 |
ctctaactacctttcctacagaataagttacacccaattgtaattatttacttgcatactttttaatcaatgtgaacctatg |
412 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| | | ||| ||| ||||||||||| |||||| |||||||||| || ||||| |
|
|
| T |
44586459 |
ctctaactacctctcctacacaataagttacgctcgattataactatttacttgcgtactttgtaatcaatgtcaatctatg |
44586378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University