View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17032_high_1 (Length: 606)
Name: NF17032_high_1
Description: NF17032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17032_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 16 - 590
Target Start/End: Original strand, 1636294 - 1636868
Alignment:
| Q |
16 |
cttctcatcgatcttgtgacaaacaaccaaaagagaaagatcatgttcatgctaaggaacagattttatgttttttatatattaaaacaattgaatgaat |
115 |
Q |
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| T |
1636294 |
cttctcatcgatcttgtgacaaacaaccaaaagagaaagatcatgttcatgctaaggaacagattttatgttttttatatattaaaacaattgaatgaat |
1636393 |
T |
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| Q |
116 |
ttaatgtcccttttcttttctacatatatgcgcagcttacggtttaagtattttggtttagttcatctgtattattacttgtagaaaggaagataaaaga |
215 |
Q |
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| T |
1636394 |
ttaatgtcccttttcttttctacatatatgcgcagcttacggtttaagtattttggtttagttcatctgtattattacttgtagaaaggaagataaaaga |
1636493 |
T |
|
| Q |
216 |
ataataaaattgaatctatatggcctttctcttttaataaagcataacaaatgggaagtaagggtggtatgaatattctttgaagaatttttacttacaa |
315 |
Q |
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| T |
1636494 |
ataataaaattgaatctatatggcttttctcttttaataaagcataacaaatgggaagtaagggtggtatgaatattcttggaagaatttttacttacaa |
1636593 |
T |
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| Q |
316 |
cacatctaaaattaactgaaaaaacaagggctttttataagttcattgatatgttaacaaacaactgtgtgctgtttttatttctttgtttaagggctag |
415 |
Q |
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| T |
1636594 |
cacatctaaaattaactgaaaaaacaagggctttttataagttcattgatatgttaacaaacaactgtgtgctgtttttatttctttgtttaagggctag |
1636693 |
T |
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| Q |
416 |
agatggattgatacaccaaaactaactccacttaatttttgcaagtgagaaacgatattaagaaataactcagttgcaaaagttgacatgatggagctgg |
515 |
Q |
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| T |
1636694 |
agatggattgatacaccaaaactaactccacttaatttttgtaagtgagaaacgatattaagaaataactcagttgcaaaatttgacatgatggagctgg |
1636793 |
T |
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| Q |
516 |
accgagactcaatggaataataagtgagaaaatttgcttacaattcaattcttgtactcttcctttggcttgtta |
590 |
Q |
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| T |
1636794 |
accgagactcaatggaataataagtgagaaaatttgcttacaattcaattcttgtactcttcctttggcttgtta |
1636868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 27738640 - 27738572
Alignment:
| Q |
96 |
attaaaacaattgaatgaatttaatgtcccttttcttttctacatatatgcgcagcttacggtttaagt |
164 |
Q |
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| T |
27738640 |
attaaagcaattgaatgagttgaatgtcctttttcttttctatatacatgcatatcttactgtttaagt |
27738572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 21160429 - 21160388
Alignment:
| Q |
194 |
ttgtagaaaggaagataaaagaataataaaattgaatctata |
235 |
Q |
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| T |
21160429 |
ttgtagaaaggaagacaaaagaataataaaagtgaatctata |
21160388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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