View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17032_high_2 (Length: 504)
Name: NF17032_high_2
Description: NF17032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17032_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 4928653 - 4928167
Alignment:
| Q |
1 |
ttttgtaaggttgaattaaaactaatataaaatataacctatgcatcaagtcaggcaattaacttattcaccttaaaaaaggtgaagtttagacacaaga |
100 |
Q |
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|||||| |||||||||||||||||| |||||||||| |||||| ||| || |||||| || |||||||||||| ||||||||||||||||||||| ||| |
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| T |
4928653 |
ttttgttaggttgaattaaaactaacataaaatatatcctatgtatcgggttaggcaaatagcttattcaccttgaaaaaggtgaagtttagacactaga |
4928554 |
T |
|
| Q |
101 |
ctactagnnnnnnnnnnnnnnnnntatcatgatgaggaattgtagatgttatattatccattcaaaactattaatttgtattccaccgtttatgttataa |
200 |
Q |
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| T |
4928553 |
ctatttgaaaaaagaaaaaaaaa--attgtggtgaggaattgtagatgttatattatccattcaaaactattaatttgtattccactgtttatgttataa |
4928456 |
T |
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| Q |
201 |
acaattgaagacaaattactgaattcagatggacaatttccactcaccctttgttgatgggtgaataagaatatgcataactaatttgaatgtttactat |
300 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
4928455 |
acaattgaagacaaattattgaattcagatggataatttccactcaccctttattgatgggtgaataagaatatgcataactaattttattgtttactat |
4928356 |
T |
|
| Q |
301 |
aaaaataaaagaacataatttaccacaaacgttgactacaattggtattgactccgatttagaaagcttcccttgtacggatgatccaaattgcgagagt |
400 |
Q |
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| T |
4928355 |
aaaaataaaagaacataatttaccacaaatacggactacaattggtattgactccgatttagaaagcttcccttgtaaggataatccaaattgcgagagt |
4928256 |
T |
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| Q |
401 |
tttggtgccatattgttatccaaaagaatgttctctggctttacgtcacggtggaaaatcggacgctttgttccagtgtgaagatagtg |
489 |
Q |
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| T |
4928255 |
tttggtgccatattgttatccaaaagaatgttctgtggaattacgtcacggtggaaaatcggacgctttgttccagtgtgaagatagtg |
4928167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 330 - 489
Target Start/End: Complemental strand, 4922085 - 4921926
Alignment:
| Q |
330 |
cgttgactacaattggtattgactccgatttagaaagcttcccttgtacggatgatccaaattgcgagagttttggtgccatattgttatccaaaagaat |
429 |
Q |
| |
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|||||||| |||||||| ||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4922085 |
cgttgacttcaattggttttgactccgattttgaaagcttcccttgtaaggataatccaaattgcgagagttttggtgccatattgttatccaaaagaat |
4921986 |
T |
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| Q |
430 |
gttctctggctttacgtcacggtggaaaatcggacgctttgttccagtgtgaagatagtg |
489 |
Q |
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| T |
4921985 |
gctgtaaggctttacgtcacggtggaaaatcgggcgctttgctccagtgtgaaggtagtg |
4921926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 279 - 489
Target Start/End: Original strand, 4907836 - 4908049
Alignment:
| Q |
279 |
aactaatttgaatgtttactataaaaataaaagaacataatttaccacaaac---gttgactacaattggtattgactccgatttagaaagcttcccttg |
375 |
Q |
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| T |
4907836 |
aactaatttgagtgtttactataaaaataaaagaaattaactcaccattaagcatgttgacttcaactggttttggcttagagttaggaagcttcccttg |
4907935 |
T |
|
| Q |
376 |
tacggatgatccaaattgcgagagttttggtgccatattgttatccaaaagaatgttctctggctttacgtcacggtggaaaatcggacgctttgttcca |
475 |
Q |
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|| ||| |||||| ||||||||||||||| ||||||| ||||| ||||||||| | | ||||||| ||||| ||| ||||| | ||||||| |||| |
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| T |
4907936 |
taaggaaaatccaagatgcgagagttttggtaccatattcttatctaaaagaatggtttgaggctttatgtcacagtgaaaaattgcgcgctttgctcca |
4908035 |
T |
|
| Q |
476 |
gtgtgaagatagtg |
489 |
Q |
| |
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|||||||| ||||| |
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| T |
4908036 |
gtgtgaaggtagtg |
4908049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 359 - 489
Target Start/End: Complemental strand, 5822334 - 5822204
Alignment:
| Q |
359 |
ttagaaagcttcccttgtacggatgatccaaattgcgagagttttggtgccatattgttatccaaaagaatgttctctggctttacgtcacggtggaaaa |
458 |
Q |
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||||||||||||||||||| || |||||| || |||||||||||| ||||||| ||||| ||||||||| | | || |||| ||||| || |||| |
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| T |
5822334 |
ttagaaagcttcccttgtaaagaaaatccaagatgtgagagttttggtaccatattcttatctaaaagaatggtttgaggttttatgtcacaatgaaaaa |
5822235 |
T |
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| Q |
459 |
tcggacgctttgttccagtgtgaagatagtg |
489 |
Q |
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| T |
5822234 |
ccgtgcgctttgttccagtgtgaaggtagtg |
5822204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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