View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_high_11 (Length: 375)
Name: NF17033_high_11
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 209 - 352
Target Start/End: Original strand, 17125401 - 17125544
Alignment:
| Q |
209 |
aatgagtatggaccagtggagtgggaaattggtgctcctggaaaagcttataccaaatggtttgctcaaatggctgtaagtttagatactggcgtaccat |
308 |
Q |
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| T |
17125401 |
aatgagtatggaccagtggaatgggaaattggtgcacctggaaaatcttacaccaaatggttttctcaaatggctgtaggactaaacactggtgttccat |
17125500 |
T |
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| Q |
309 |
ggattatgtgcaaacaagaagatgctcctgatcctattgtaagc |
352 |
Q |
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| T |
17125501 |
gggttatgtgtaagcaagaagatgctcctgatccaattgtaagc |
17125544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 351
Target Start/End: Complemental strand, 42989443 - 42989291
Alignment:
| Q |
199 |
gtagatagaaaatgagtatggaccagtggagtgggaaattggtgctcctggaaaagcttataccaaatggtttgctcaaatggctgtaagtttagatact |
298 |
Q |
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| T |
42989443 |
gtagattgaaaatgaatatggacctatggagtatgaaattggtgctcctggtaaatcctacaccaaatgggcagcagatatggctgtaggacttggtacc |
42989344 |
T |
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| Q |
299 |
ggcgtaccatggattatgtgcaaacaagaagatgctcctgatcctattgtaag |
351 |
Q |
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| T |
42989343 |
ggagttccgtggatcatgtgcaagcaagatgatgctcctgatcctgttgtaag |
42989291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 200 - 351
Target Start/End: Original strand, 5230326 - 5230477
Alignment:
| Q |
200 |
tagatagaaaatgagtatggaccagtggagtgggaaattggtgctcctggaaaagcttataccaaatggtttgctcaaatggctgtaagtttagatactg |
299 |
Q |
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| T |
5230326 |
tagattgagaatgagtatggacctgtggaatgggaaattggtgctcctggaaaggcttacacaaaatgggctgctcaaatggctgtaggtctagatactg |
5230425 |
T |
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| Q |
300 |
gcgtaccatggattatgtgcaaacaagaagatgctcctgatcctattgtaag |
351 |
Q |
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| T |
5230426 |
gtgtaccttgggacatgtgcaagcaagaagacgcccctgatcccgttgtaag |
5230477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 52549164 - 52549112
Alignment:
| Q |
116 |
ctagaaaggtttaagctggccaattacattattgcagcaataatgatcataat |
168 |
Q |
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| T |
52549164 |
ctagaaaggtttaagctggccaattacattattgcagtaataatgatcataat |
52549112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 52549279 - 52549229
Alignment:
| Q |
1 |
ggcaaggaaatgtgatttaaatatatttgtatgattgtattcctattttaa |
51 |
Q |
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| T |
52549279 |
ggcaaggaaatgtgatttaaatatatttgtataattgtattcctattttaa |
52549229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 351
Target Start/End: Original strand, 5451594 - 5451744
Alignment:
| Q |
201 |
agatagaaaatgagtatggaccagtggagtgggaaattggtgctcctggaaaagcttataccaaatggtttgctcaaatggctgtaagtttagatactgg |
300 |
Q |
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| T |
5451594 |
agattgaaaatgaatatggaccaatggagtatgaacttggtgctcctgctaaagcctatactcagtgggcagcacatatggctgtaggacttaatactgg |
5451693 |
T |
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| Q |
301 |
cgtaccatggattatgtgcaaacaagaagatgctcctgatcctattgtaag |
351 |
Q |
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| T |
5451694 |
ggttccatgggtcatgtgcaaacaagatgatgctcctgatcctgttgtaag |
5451744 |
T |
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