View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17033_high_18 (Length: 308)

Name: NF17033_high_18
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17033_high_18
NF17033_high_18
[»] chr1 (13 HSPs)
chr1 (12-295)||(27208099-27208382)
chr1 (12-159)||(27433179-27433331)
chr1 (12-96)||(27455327-27455411)
chr1 (183-265)||(27443166-27443248)
chr1 (68-159)||(27443284-27443375)
chr1 (183-256)||(27221595-27221668)
chr1 (17-159)||(27221415-27221557)
chr1 (17-82)||(20952786-20952851)
chr1 (17-159)||(27215453-27215595)
chr1 (190-256)||(27215653-27215720)
chr1 (93-138)||(27390259-27390304)
chr1 (93-138)||(27410494-27410539)
chr1 (183-256)||(27433378-27433449)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 27208099 - 27208382
Alignment:
Q  12 accaaatgaagagaaataaactaagctaaatgaattaatcgattaactatatggaaaattaatgtagttgagtactgatatatataccatagaagaggaa 111  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27208099 accacatgaagagaaataaactaagctaaatgaattaatggattaactatatggaaaattaatgtagttgagtactgatatatataccatagaagaggaa 27208198  T
Q  112 tgcaaagctaaagcataaagcaacacggttgcacttcattttggatatatagacttctctcttcgcagtatttttctctttcgattgtagtttgctgttt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27208199 tgcaaagctaaagcataaagcaacacggttgcacttcattttggatatatagacttctctcttcgcagtatttttctctttcgattgtagtttgctgttt 27208298  T
Q  212 gaaagtgattgatgaagtttctctcttcttcttgacatatatatatagccttctacatatacaaattattggcttaagtataat 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27208299 gaaagtgattgatgaagtttctctcttcttcttgacatatatatatagccttctacatatacaaattattggcttaattataat 27208382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 27433179 - 27433331
Alignment:
Q  12 accaaatgaagagaaataaactaagctaaatgaattaatcgattaactatatggaaaattaatgtagt----tgagtactgatatata-taccatagaag 106  Q
    |||| |||||||| |||||| ||||||||||||||||||  |||||||||||||||||||||||||||    |||||||||||||||| |||||||||||    
T  27433179 accacatgaagaggaataaaataagctaaatgaattaatttattaactatatggaaaattaatgtagttgaatgagtactgatatatattaccatagaag 27433278  T
Q  107 aggaatgcaaagctaaagcataaagcaacacggttgcacttcattttggatat 159  Q
    |||||||| ||||||||||||||||||||| || ||  |||||||||||||||    
T  27433279 aggaatgccaagctaaagcataaagcaacatgggtgttcttcattttggatat 27433331  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 27455327 - 27455411
Alignment:
Q  12 accaaatgaagagaaataaactaagctaaatgaattaatcgattaactatatggaaaattaatgtagttgagtactgatatatat 96  Q
    |||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| ||||||||||    
T  27455327 accacatgaagagcaataaactaagctaaatgaattaattgatttactatatggaaaattaatgtagttgggtattgatatatat 27455411  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 27443248 - 27443166
Alignment:
Q  183 ttttctctttcgattgtagtttgctgtttgaaagtgattgatgaagtttctctcttcttcttgacatatatatatagccttct 265  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||  ||||| |||| ||||||| ||||||||||||||    
T  27443248 ttttctctttcgattgtagtttgctgtttgaaggtgattgatgaagttgttctctgcttcatgacataaatatatagccttct 27443166  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 27443375 - 27443284
Alignment:
Q  68 aattaatgtagttgagtactgatatatataccatagaagaggaatgcaaagctaaagcataaagcaacacggttgcacttcattttggatat 159  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| |||||||||  |||   |||||||||||||    
T  27443375 aattaatgtagttgagtagtgatatatataccatagaagaggaatgcaaaactaaggcatagagcaacacgagtgcttgtcattttggatat 27443284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 27221595 - 27221668
Alignment:
Q  183 ttttctctttcgattgtagtttgctgtttgaaagtgattgatgaagtttctctcttcttcttgacatatatata 256  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||  ||||| |||| |||||||||||||    
T  27221595 ttttctctttcgattgtagtttgctgtttgtaagtgattgatgaagttgttctctgcttcgtgacatatatata 27221668  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 27221415 - 27221557
Alignment:
Q  17 atgaagagaaataaactaagctaaatgaattaatcgattaactatatggaaaattaatgtagttgagtactgatatat----ataccatagaagaggaat 112  Q
    |||||||||||| |||| |||||| ||||||    |||||| ||||||||||||||||||||||  ||| ||||||||     |||||||||||||||||    
T  27221415 atgaagagaaattaacttagctaagtgaatt----gattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccatagaagaggaat 27221510  T
Q  113 gcaaagctaaagcataaagcaacacggttgcacttcattttggatat 159  Q
    ||||| |||| ||||| |||||| ||| |||   |||||||||||||    
T  27221511 gcaaaactaaggcatagagcaacgcgggtgcttgtcattttggatat 27221557  T

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Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 20952786 - 20952851
Alignment:
Q  17 atgaagagaaataaactaagctaaatgaattaatcgattaactatatggaaaattaatgtagttga 82  Q
    ||||||||  ||||||||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  20952786 atgaagagggataaactaagctaaatgaattaatttattaactatatggaaaattagtgtagttga 20952851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 27215453 - 27215595
Alignment:
Q  17 atgaagagaaataaactaagctaaatgaattaatcgattaactatatggaaaattaatgtagttgagtactgatatat----ataccatagaagaggaat 112  Q
    |||||||||||| |||| |||||| ||||||    |||||| ||||||||||||||||||||||  ||| ||||||||     |||| ||||||||||||    
T  27215453 atgaagagaaattaacttagctaagtgaatt----gattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaat 27215548  T
Q  113 gcaaagctaaagcataaagcaacacggttgcacttcattttggatat 159  Q
    ||||| |||| ||| | |||||||||| |||   |||||||||||||    
T  27215549 gcaaaactaaggcacagagcaacacgggtgcttgtcattttggatat 27215595  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 27215653 - 27215720
Alignment:
Q  190 tttcgattgtagtttgctgtttgaaagtgatt-gatgaagtttctctcttcttcttgacatatatata 256  Q
    |||||||||||||||| ||| |||| |||||| ||||||||| |||||| |||||| |||||||||||    
T  27215653 tttcgattgtagtttgttgtgtgaaggtgatttgatgaagttgctctctgcttctttacatatatata 27215720  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 27390259 - 27390304
Alignment:
Q  93 atataccatagaagaggaatgcaaagctaaagcataaagcaacacg 138  Q
    |||||||||||||||||||||||||||||| ||| | |||||||||    
T  27390259 atataccatagaagaggaatgcaaagctaaggcagagagcaacacg 27390304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 27410494 - 27410539
Alignment:
Q  93 atataccatagaagaggaatgcaaagctaaagcataaagcaacacg 138  Q
    |||||||||||||||||||||||||||||| ||| | |||||||||    
T  27410494 atataccatagaagaggaatgcaaagctaaggcagagagcaacacg 27410539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 27433378 - 27433449
Alignment:
Q  183 ttttctctttcgattgtagtttg-ctgtttgaaagtgattgatgaagtttctctcttcttcttgacatatatata 256  Q
    ||||||||||| ||||||||||  |||||||   |||||||||||| || |||||| ||||||||||||||||||    
T  27433378 ttttctctttcaattgtagtttttctgtttg---gtgattgatgaaattgctctctgcttcttgacatatatata 27433449  T

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