View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_high_2 (Length: 622)
Name: NF17033_high_2
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 17 - 615
Target Start/End: Original strand, 38320417 - 38321017
Alignment:
| Q |
17 |
atttataagcatagtacatcaaactgtcatatatct-gtagtgtcactgtccaaatatcatttctgaannnnnnnn-aatcaatcattataaattatatg |
114 |
Q |
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|||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38320417 |
atttataagcatagtacatcaaaccatcatatattttgtagtgtcactgtccaaatatcatttctgaatatttttttaatcaatcattataaattatatg |
38320516 |
T |
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| Q |
115 |
gagtggatgcataactagtctaggatgcacaacattaattgcgtgaaatggtacgtgattaatttatagtgtgctagaagtgcttagtttataccnnnnn |
214 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38320517 |
gagtgtatgcataactagtctaggatgcacaacattaattgcgtgaaatggtacgtgattaatttatagtgtgctagaagtgcttagttt-taccaaaaa |
38320615 |
T |
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| Q |
215 |
nnn-ggtacaaatttagtactaataatatggccatcgtggtcacaaacatgaacaatttgatatccatatggtatatgcttaatttccacgggcgtagtt |
313 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38320616 |
aaaaggtacaa-tttagtattaataatatggccatcgtggtcacaaacatgaacaatttgatatccatatggtatatgcttaatttccacgggcgtagtt |
38320714 |
T |
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| Q |
314 |
ataaaatcaaagtgcataattgacatgtgtccacaaaactagcgactaagtagtgtgtgtggagcagttatttgaaaaagagaccacacaattattgtca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38320715 |
ataaaatcaaagtgcataattgacatgtgtccacaaaactagcgactaagtagtgtgtgtggagcagttatttgaaaaagagaccacacaattattgtca |
38320814 |
T |
|
| Q |
414 |
cattgtcatagacaaaacatgttcaattcaatttaacccactctcttataaacaaaacaaacacgacc-aaaatctcttatattcgtggtggttgatcag |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
38320815 |
cattgtcatagacaaaacatgttcaattcaatttaacccactctcttataaacaaaacaaacacgaccaaaaaactcttatattcgtggtggttgatcag |
38320914 |
T |
|
| Q |
513 |
ttattcttaatacaatgttcttcccccaactttttcacatcacaacaattcttctctaacttcaccttgtattcatttttagatatgtttgacatattct |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38320915 |
ttattcttaatacaatgttcttcccccaactttttcacatcacaacaattcttctctaacttcaccttgtattcatttttagatatgtttgacatattgt |
38321014 |
T |
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| Q |
613 |
tcg |
615 |
Q |
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| T |
38321015 |
tcg |
38321017 |
T |
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