View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_high_28 (Length: 246)
Name: NF17033_high_28
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 2056046 - 2056262
Alignment:
| Q |
20 |
gtgagttggtttcatcaattccacttgattgtgaatttgtgatatgaactcataaacatgatgtggtttttatttcatccaatggatgaattacaatgta |
119 |
Q |
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| T |
2056046 |
gtgagttggtttcatcaattccacttgattgtgaatttgtgatatgaactcataaacatgatgtggtttttatttcatccaatggatgaattacaatgta |
2056145 |
T |
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| Q |
120 |
taaacattcacttattgaacaagatgttttatttatcataaccctccagtttcgagagaaaggttccatagtaattcagagttcagttgagaggtaagta |
219 |
Q |
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| T |
2056146 |
taaacattcacttattgaacaaaatgttttatttatcataaccctccagtttggagagaaaggttccatagtaattcagagttcagttgagaggtaagta |
2056245 |
T |
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| Q |
220 |
aagtataaccaagaatt |
236 |
Q |
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| T |
2056246 |
aagtataaccaagaatt |
2056262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 56 - 221
Target Start/End: Original strand, 2052207 - 2052376
Alignment:
| Q |
56 |
ttgtgatatgaactcataaacatgatgtggtttttatt--tcatccaatggatgaattacaatgtataaacattcacttattgaaca-agatgttttatt |
152 |
Q |
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| T |
2052207 |
ttgtgatatgaactcataaatatgatgtgtttttttttcttcatgcaatagatgaattacaaggtataaacattcacttattgaacacagatattttatt |
2052306 |
T |
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| Q |
153 |
tatcataaccctccagtttcgagagaaaggttcca-tagtaattcagagttcagttgagaggtaagtaaa |
221 |
Q |
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| T |
2052307 |
tatcataaccctccagtttcgagagaaaggttccattaataattcagagttcggttggaaggtaagtaaa |
2052376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 2035045 - 2035102
Alignment:
| Q |
81 |
tgtggtttttatttcatccaatggatgaattacaatgtataaacattcacttattgaa |
138 |
Q |
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| T |
2035045 |
tgtggtttctatttcatgctatggatgaattaaaaagtataaacattcacttattgaa |
2035102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 2048356 - 2048404
Alignment:
| Q |
90 |
tatttcatccaatggatgaattacaatgtataaacattcacttattgaa |
138 |
Q |
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| T |
2048356 |
tatttcatgctatggatgaattacaaagtataaacattcacctattgaa |
2048404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 2059355 - 2059399
Alignment:
| Q |
90 |
tatttcatccaatggatgaattacaatgtataaacattcacttat |
134 |
Q |
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| T |
2059355 |
tatttcatgctatggatgaattacaaagtataaacattcacttat |
2059399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 2039142 - 2039200
Alignment:
| Q |
80 |
atgtggtttttatttcatccaatggatgaattacaatgtataaacattcacttattgaa |
138 |
Q |
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| T |
2039142 |
atgtgatttctatttcatgctatggatgaattacaaagcataaacattcacttgttgaa |
2039200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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