View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_high_30 (Length: 234)
Name: NF17033_high_30
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 13183652 - 13183444
Alignment:
| Q |
11 |
ataatactattagatgtattcaaatcaggagttaagaacgctgttatttttaacattttttattaaaattgaatgaaagaaaaacaaataaaaatatgcg |
110 |
Q |
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| T |
13183652 |
ataattctattagatgtattccaatcaggagttaagaacgctgttatttttaacattttttattaaaattgaatgaaagaaaaacaaataaaaatatgcg |
13183553 |
T |
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| Q |
111 |
gtaacaatggtttttaagggaatattgtagcaatgttttct-ttttaagggctgacaattttgtaatggtaatattaataaaactaaagtaattccttca |
209 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13183552 |
gtaacaatggtttttaagggaatattatagcaatgttttcttttttaagggctgacaattttgtaatggtaatattaataaaactaaagtaattccttca |
13183453 |
T |
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| Q |
210 |
ccccaaatt |
218 |
Q |
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||||||||| |
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| T |
13183452 |
ccccaaatt |
13183444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 13109391 - 13109600
Alignment:
| Q |
11 |
ataatactattagatgtattcaaatcaggagttaagaacgctgttatttttaacatttt-ttattaaaattgaatgaaagaaaaacaaataaaaatatgc |
109 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13109391 |
ataattctattagatgtattccaatcaggagttaagaacgctgttatttttaacatttttttattaaaattgaatgaaagaaaaacaaataaaaatatgc |
13109490 |
T |
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| Q |
110 |
ggtaacaatggtttttaagggaatattgtagcaatgttttc-tttttaagggctgacaattttgtaatggtaatattaataaaactaaagtaattccttc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13109491 |
ggtaacaatggtttttaagggaatattgtagcaatgttttcttttttaagagctgacaattttgtaatggtaatattaataaaactaaagtaattccttc |
13109590 |
T |
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| Q |
209 |
accccaaatt |
218 |
Q |
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|||||||||| |
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| T |
13109591 |
accccaaatt |
13109600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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