View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_low_1 (Length: 697)
Name: NF17033_low_1
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 352 - 675
Target Start/End: Complemental strand, 43383371 - 43383048
Alignment:
| Q |
352 |
tcaaaatgaaatatattagctacgacgttggagacccctcggtacaaggtgtaccagagggaccaacctnnnnnnncaaccggtcacaatgtatatttac |
451 |
Q |
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| T |
43383371 |
tcaaaatgaaatatattagctacgacgttggagacccctcggtacaaggtgtaccagagggaccaacctaaaaaaacaaccagtcacaatgtatatttac |
43383272 |
T |
|
| Q |
452 |
aaaaccacattccttatgtgttattaatcgctggtggcaaacttgtaatgttaacgtgataattcacatttatataaccgacaaattttgatgctaacta |
551 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43383271 |
aaaaccacattccttatttgttattaattgctggtggcaaacttgtactgttaacgtgataattcacatttatataaccgacaaattttaatgctaacta |
43383172 |
T |
|
| Q |
552 |
tgcgattgtatttaataaaaagataagattggtcctttaatttatttaagctttagtgttggataggccaatggaagtcttattttaaactttttatcaa |
651 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43383171 |
tgcgattgtatttaataaaaagataaaattgatcctttaatttatttaagctttagtgttggataggccaatggaagtcttattttaaactttttatcaa |
43383072 |
T |
|
| Q |
652 |
gtgttctaaagatatttattagta |
675 |
Q |
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| T |
43383071 |
gtgttctaaagatatttattagta |
43383048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 43383049 - 43383371
Alignment:
| Q |
1 |
actaataaatatctttagaacacttgataaaaagtttaaaataagacttccattggcctatccaacactaaagcttaaataaattaaaggaccaatctta |
100 |
Q |
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| T |
43383049 |
actaataaatatctttagaacacttgataaaaagtttaaaataagacttccattggcctatccaacactaaagcttaaataaattaaaggatcaatttta |
43383148 |
T |
|
| Q |
101 |
tctttttattaaatacaatcgcatagttagcatcaaaatttgtcggttatataaatgtgaattatcacgttaacattacaagtttgccaccagcgattaa |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
43383149 |
tctttttattaaatacaatcgcatagttagcattaaaatttgtcggttatataaatgtgaattatcacgttaacagtacaagtttgccaccagcaattaa |
43383248 |
T |
|
| Q |
201 |
taacacataaggaatgtggttttgtaaatatacattgtgaccggttgnnnnnnnaggttggtccctctggtacaccttgtaccgaggggtctccaacgtc |
300 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43383249 |
taacaaataaggaatgtggttttgtaaatatacattgtgactggttgtttttttaggttggtccctctggtacaccttgtaccgaggggtctccaacgtc |
43383348 |
T |
|
| Q |
301 |
gtagctaatatatttcattttga |
323 |
Q |
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| T |
43383349 |
gtagctaatatatttcattttga |
43383371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 405
Target Start/End: Original strand, 7935417 - 7935470
Alignment:
| Q |
352 |
tcaaaatgaaatatattagctacgacgttggagacccctcggtacaaggtgtac |
405 |
Q |
| |
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|||||||||||||||||||| ||| || |||| || |||| ||||||||||||| |
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| T |
7935417 |
tcaaaatgaaatatattagcaacggcgatggaaactcctcagtacaaggtgtac |
7935470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 7935470 - 7935417
Alignment:
| Q |
270 |
gtacaccttgtaccgaggggtctccaacgtcgtagctaatatatttcattttga |
323 |
Q |
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||||||||||||| |||| || |||| || ||| |||||||||||||||||||| |
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| T |
7935470 |
gtacaccttgtactgaggagtttccatcgccgttgctaatatatttcattttga |
7935417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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