View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17033_low_10 (Length: 414)

Name: NF17033_low_10
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17033_low_10
NF17033_low_10
[»] chr7 (1 HSPs)
chr7 (1-399)||(29622176-29622574)
[»] chr5 (8 HSPs)
chr5 (1-149)||(35386859-35387002)
chr5 (1-94)||(35371347-35371440)
chr5 (45-100)||(23935870-23935925)
chr5 (3-68)||(35411507-35411572)
chr5 (222-359)||(35411746-35411872)
chr5 (7-68)||(35426265-35426326)
chr5 (3-68)||(35755692-35755757)
chr5 (246-278)||(35387108-35387140)
[»] chr3 (1 HSPs)
chr3 (1-100)||(1154521-1154620)
[»] chr2 (3 HSPs)
chr2 (1-108)||(30626889-30626996)
chr2 (1-108)||(30663815-30663922)
chr2 (1-108)||(30672495-30672602)
[»] chr1 (2 HSPs)
chr1 (308-357)||(10414737-10414786)
chr1 (3-67)||(10414954-10415018)


Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 29622574 - 29622176
Alignment:
Q  1 ttggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29622574 ttggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctagga 29622475  T
Q  101 ttcgttgcgttgctactgtgataagagaataattgtgttcacaagaaaggttgagtagtctgtagccataaatcaagtgtgtgattgttattgttgcgat 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29622474 ttcgttgcgttgctactgtgataagaaaataattgtgttcacaagaaaggttgagtagtctgtagccataaatcaagtgtgtgattgttattgttgcgat 29622375  T
Q  201 actataaattaaaatttctgtgtataataatttgtatttgtagtcagttgcactaaatacatggtattgtttggaaatatttccagttaatatcaagtag 300  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  29622374 actatgaattaaaatttctgtgtataataatctgtatttgtagtcagttgcactaaatacatggtattgtttggaaatattgctagttaatatcaagtag 29622275  T
Q  301 ttgtttcgtaattttgattttagtttctaaagttaatttgatggcttgcacgtttgtctagaaatttcgatctgttggtttcactttggtggttgtgat 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29622274 ttgtttcgtaattttgattttagtttctaaagttaatttgatggcttgcacgtttgtctagaaatttcgatctgttggtttcactttggtggttgtgat 29622176  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 35386859 - 35387002
Alignment:
Q  1 ttggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctagga 100  Q
    ||||||| ||||||||| ||||| |  || ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35386859 ttggagtcgcatgttctaaagaggtcactactcatcgaatgttgataaaagatgttatagttaagttgaatcaaatcaaatcaaagtttccatgctagga 35386958  T
Q  101 ttcgttgcgttgctactgtgataagagaataattgtgttcacaagaaag 149  Q
           || |||||||||||||||| ||||||||||||||||||||||    
T  35386959 -----accgctgctactgtgataagaaaataattgtgttcacaagaaag 35387002  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 35371347 - 35371440
Alignment:
Q  1 ttggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatg 94  Q
    ||||||||||||||||| |||||| |||||||||||||||| | |||||||||| ||||| ||| ||||||||||||||||||| |||||||||    
T  35371347 ttggagttgcatgttctgaagagtctcctgctcatcgaatgttgataaaagatgctatagctaatttgaatgaaatcaaatcaatgtttccatg 35371440  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 23935925 - 23935870
Alignment:
Q  45 ataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctagga 100  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||    
T  23935925 ataaaagatgttacagttaagttgagtgaaataaaatcaaagtttccatgctagga 23935870  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 35411507 - 35411572
Alignment:
Q  3 ggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttg 68  Q
    ||||||||||| ||| | ||||||||||||||||||||| | |||||||||||||| |||||||||    
T  35411507 ggagttgcatgctctgacgagtttcctgctcatcgaatgttgataaaagatgttatcgttaagttg 35411572  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 359
Target Start/End: Original strand, 35411746 - 35411872
Alignment:
Q  222 gtataataatttgtatttgtagtcagttgcactaaatacatggtattgtttggaaatatttccagttaatat-caagtagttgtttcgtaattttgattt 320  Q
    |||||||||||||| |||||||||||| | | | ||| ||||||||||||||||||||||   ||||||||| ||||||           |||||| |||    
T  35411746 gtataataatttgtgtttgtagtcagt-gtattgaatgcatggtattgtttggaaatattgttagttaatatgcaagta-----------attttggttt 35411833  T
Q  321 tagtttctaaagttaatttgatggcttgcacgtttgtct 359  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  35411834 tagtttctaaagttaatttgatgtcttgcatgtttgtct 35411872  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 35426265 - 35426326
Alignment:
Q  7 ttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttg 68  Q
    ||||||||||| |||| |||||| ||||  ||||||| | ||||||||||||||||||||||    
T  35426265 ttgcatgttctgaagaatttcctactcagagaatgctcacaaaagatgttatagttaagttg 35426326  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 35755692 - 35755757
Alignment:
Q  3 ggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttg 68  Q
    ||||||||||||||| |||| |||||| ||||  ||||||| | ||||||||||||| ||||||||    
T  35755692 ggagttgcatgttctgaagaatttcctactcagagaatgctcacaaaagatgttataattaagttg 35755757  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 35387108 - 35387140
Alignment:
Q  246 agttgcactaaatacatggtattgtttggaaat 278  Q
    ||||||| |||||||||||||||||||||||||    
T  35387108 agttgcattaaatacatggtattgtttggaaat 35387140  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 1154521 - 1154620
Alignment:
Q  1 ttggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctagga 100  Q
    |||||||||||||| || ||||||||||||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  1154521 ttggagttgcatgtactgaagagtttcctgctcatcgaatgttgataaaacatgttattgttaagttgaatgaaatcaaatcaaagattccatgctagga 1154620  T

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Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 30626889 - 30626996
Alignment:
Q  1 ttggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctagga 100  Q
    ||||||||||||||||  ||||||||||  || |||||||||  ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||    
T  30626889 ttggagttgcatgttcagaagagtttccatctaatcgaatgccgataaaagatgttatagcaaagttgaatgaaatcaaatcaatgtttccatgctagga 30626988  T
Q  101 ttcgttgc 108  Q
    | ||||||    
T  30626989 tccgttgc 30626996  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 30663815 - 30663922
Alignment:
Q  1 ttggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctagga 100  Q
    ||||||||||||||||| ||||||||||  || |||||||||  ||||||||||||||||  |||||||||||||||||||||| |||||||||| ||||    
T  30663815 ttggagttgcatgttctgaagagtttccatcttatcgaatgccgataaaagatgttatagcaaagttgaatgaaatcaaatcaatgtttccatgcgagga 30663914  T
Q  101 ttcgttgc 108  Q
    | ||||||    
T  30663915 tccgttgc 30663922  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 30672495 - 30672602
Alignment:
Q  1 ttggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctagga 100  Q
    ||||||||||||||||| ||||||||||  || |||||||||  ||||||||||||||||  |||||||||||||||||||||| |||||||||| ||||    
T  30672495 ttggagttgcatgttctgaagagtttccatcttatcgaatgccgataaaagatgttatagcaaagttgaatgaaatcaaatcaatgtttccatgcgagga 30672594  T
Q  101 ttcgttgc 108  Q
    | ||||||    
T  30672595 tccgttgc 30672602  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 10414786 - 10414737
Alignment:
Q  308 gtaattttgattttagtttctaaagttaatttgatggcttgcacgtttgt 357  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||    
T  10414786 gtaattttggttttagtttctaaagttaatttaatgtcttgcacgtttgt 10414737  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 10415018 - 10414954
Alignment:
Q  3 ggagttgcatgttctcaagagtttcctgctcatcgaatgctaataaaagatgttatagttaagtt 67  Q
    ||||||||||||||| ||||  ||||| ||||||||||| | |||||||||||||||| ||||||    
T  10415018 ggagttgcatgttctgaagaagttccttctcatcgaatgttgataaaagatgttatagataagtt 10414954  T

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