View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17033_low_11 (Length: 410)

Name: NF17033_low_11
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17033_low_11
NF17033_low_11
[»] chr1 (9 HSPs)
chr1 (19-399)||(14669092-14669472)
chr1 (19-399)||(14706432-14706812)
chr1 (23-276)||(14653678-14653940)
chr1 (23-276)||(14663469-14663731)
chr1 (293-359)||(14654001-14654067)
chr1 (293-359)||(14663792-14663858)
chr1 (34-122)||(15599903-15599991)
chr1 (91-150)||(15613174-15613233)
chr1 (293-332)||(14670226-14670266)
[»] chr2 (2 HSPs)
chr2 (361-399)||(30732351-30732389)
chr2 (293-332)||(30731558-30731598)
[»] chr3 (1 HSPs)
chr3 (215-276)||(54525598-54525659)
[»] chr7 (2 HSPs)
chr7 (225-273)||(4329095-4329143)
chr7 (225-273)||(4498766-4498814)


Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 14669092 - 14669472
Alignment:
Q  19 aacctgacaatgtggtaagaatgattgacctttcatgtaaaaagctgtatggagctaaatatcatacttcactttcctggctatctgatatgcacatttt 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  14669092 aacctgacaatgtggtaagaatgattgacctttcatgtaataagctgtatggagctaaatatcacacttcactttccaggctatctgatatgcacatttt 14669191  T
Q  119 gatcttgtcaagaaaccatatgtctagatagaaaccaagagacatgggaagcataaagtttttagaatcccttgaaattgaaagtgaacatacctttcca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||| ||||||||||||    
T  14669192 gatcttgtcaagaaaccatatgtctagatagaaaccaagagacatgggaagcttaaaattgttacaatcccttgaaattgaaagtgagcatacctttcca 14669291  T
Q  219 agtcatgaacttggaggcatgcttattttcaatttcttgaccacttgtaagatctgatgcaggtaaagttactaaacactgaagttgcaacttatttata 318  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  14669292 agtcatgaacttggaggcatgattattttcaatttcttgaccacttgtaagatctgatgcaagtaaagttactcaacactgaagttgcaacttatttata 14669391  T
Q  319 gcataccatatgaatcaaataaatttaagcatcatattaacaaaggtaatagcaaccaatcaaacaaatattacatttcat 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14669392 gcataccatatgaatcaaataaatttaagcatcatattaacaaaggtaatagcaaccaatcaaacaaatattacatttcat 14669472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 14706812 - 14706432
Alignment:
Q  19 aacctgacaatgtggtaagaatgattgacctttcatgtaaaaagctgtatggagctaaatatcatacttcactttcctggctatctgatatgcacatttt 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14706812 aacctgacaatgtggtaagaatgattgacctttcatgtaataagctgtatggagctaaatatcacacttcactttcctggctatctgatatgcacatttt 14706713  T
Q  119 gatcttgtcaagaaaccatatgtctagatagaaaccaagagacatgggaagcataaagtttttagaatcccttgaaattgaaagtgaacatacctttcca 218  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || ||| |||||||||||||||||||||| ||||||||||||    
T  14706712 gatcttgtcaagaaaccatatgtctagatagaaaccatgagacatgggaagcttaaaattgttacaatcccttgaaattgaaagtgagcatacctttcca 14706613  T
Q  219 agtcatgaacttggaggcatgcttattttcaatttcttgaccacttgtaagatctgatgcaggtaaagttactaaacactgaagttgcaacttatttata 318  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  14706612 agtcatgaacttggaggcatgtttattttcaatttcttgaccacttgtaagatctgatgcaagtaaagttactcaacactgaagttgcaacttatttata 14706513  T
Q  319 gcataccatatgaatcaaataaatttaagcatcatattaacaaaggtaatagcaaccaatcaaacaaatattacatttcat 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  14706512 gcataccatatgaatcaaataaatttaagcatcatattaacaaaggtaataataaccaatcaaacaaatattacatttcat 14706432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 23 - 276
Target Start/End: Original strand, 14653678 - 14653940
Alignment:
Q  23 tgacaatgtggtaagaatgattgacctttcatgtaaaaagctgtatggagctaaatatcatacttcactttcctggctatctgatatgcacattttgatc 122  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |  | || || ||| | |||||| || || |||||||||||||    
T  14653678 tgacaatgtggtaagaatgattgacctttcatgtaataagctgtttggagataaattttctcctgcaattttcaggctatttgctaagcacattttgatc 14653777  T
Q  123 ttgtcaagaaaccatatgtctagatagaaaccaagagacatgggaagcataaagtttttagaatcccttgaaattgaaagtgaacatacctttccaagtc 222  Q
    ||| | |||||||||||||||||||||||||||  |||||||||||||||||| || |||||||||||| ||||| |||| || ||||||||||||||||    
T  14653778 ttgacgagaaaccatatgtctagatagaaaccataagacatgggaagcataaaattgttagaatcccttaaaattcaaagcgagcatacctttccaagtc 14653877  T
Q  223 atgaa--------cttggaggcatgcttattttcaatttcttg-accacttgtaagatctgat 276  Q
    |||||        |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  14653878 atgaacttggactcttggaggcatgcttattttcaatttcttgtaccacttataagatctgat 14653940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 23 - 276
Target Start/End: Original strand, 14663469 - 14663731
Alignment:
Q  23 tgacaatgtggtaagaatgattgacctttcatgtaaaaagctgtatggagctaaatatcatacttcactttcctggctatctgatatgcacattttgatc 122  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |  | || || ||| | |||||| || || |||||||||||||    
T  14663469 tgacaatgtggtaagaatgattgacctttcatgtaataagctgtttggagataaattttctcctgcaattttcaggctatttgctaagcacattttgatc 14663568  T
Q  123 ttgtcaagaaaccatatgtctagatagaaaccaagagacatgggaagcataaagtttttagaatcccttgaaattgaaagtgaacatacctttccaagtc 222  Q
    ||| | |||||||||||||||||||||||||||  |||||||||||||||||| || |||||||||||| ||||| |||| || ||||||||||||||||    
T  14663569 ttgacgagaaaccatatgtctagatagaaaccataagacatgggaagcataaaattgttagaatcccttaaaattcaaagcgagcatacctttccaagtc 14663668  T
Q  223 atgaa--------cttggaggcatgcttattttcaatttcttg-accacttgtaagatctgat 276  Q
    |||||        |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  14663669 atgaacttggactcttggaggcatgcttattttcaatttcttgtaccacttataagatctgat 14663731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 293 - 359
Target Start/End: Original strand, 14654001 - 14654067
Alignment:
Q  293 aacactgaagttgcaacttatttatagcataccatatgaatcaaataaatttaagcatcatattaac 359  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14654001 aacactgaagttgcgacttatttatagcataccatatgaatcaaataaatttaagcatcatcttaac 14654067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 293 - 359
Target Start/End: Original strand, 14663792 - 14663858
Alignment:
Q  293 aacactgaagttgcaacttatttatagcataccatatgaatcaaataaatttaagcatcatattaac 359  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14663792 aacactgaagttgcgacttatttatagcataccatatgaatcaaataaatttaagcatcatcttaac 14663858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 15599991 - 15599903
Alignment:
Q  34 taagaatgattgacctttcatgtaaaaagctgtatggagctaaatatcatacttcactttcctggctatctgatatgcacattttgatc 122  Q
    |||||||| |||||||||||||||| ||||||| ||||| ||||| || |  | || ||||| ||||||||| ||||||||||||||||    
T  15599991 taagaatggttgacctttcatgtaataagctgtttggagataaatttcctgttccaatttccaggctatctgttatgcacattttgatc 15599903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 15613233 - 15613174
Alignment:
Q  91 tttcctggctatctgatatgcacattttgatcttgtcaagaaaccatatgtctagataga 150  Q
    ||||| ||||||||| ||  |||||||| || |||||||||||||||||||||| |||||    
T  15613233 tttccaggctatctgctacacacattttcatgttgtcaagaaaccatatgtctacataga 15613174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 332
Target Start/End: Original strand, 14670226 - 14670266
Alignment:
Q  293 aacactgaagttgcaa-cttatttatagcataccatatgaa 332  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  14670226 aacactgaagttgcaaacttatttatagcataccatgtgaa 14670266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 361 - 399
Target Start/End: Complemental strand, 30732389 - 30732351
Alignment:
Q  361 aaggtaatagcaaccaatcaaacaaatattacatttcat 399  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30732389 aaggtaatagcaaccaatcaaacaaatattacatttcat 30732351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 332
Target Start/End: Complemental strand, 30731598 - 30731558
Alignment:
Q  293 aacactgaagttgcaa-cttatttatagcataccatatgaa 332  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  30731598 aacactgaagttgcaaacttatttatagcataccatgtgaa 30731558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 54525659 - 54525598
Alignment:
Q  215 tccaagtcatgaacttggaggcatgcttattttcaatttcttgaccacttgtaagatctgat 276  Q
    ||||||||||||| |||||| ||||||| |||||||| | |||||| |||||||||| ||||    
T  54525659 tccaagtcatgaagttggagacatgcttgttttcaatgtgttgaccgcttgtaagatttgat 54525598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 4329143 - 4329095
Alignment:
Q  225 gaacttggaggcatgcttattttcaatttcttgaccacttgtaagatct 273  Q
    ||||||| ||||||||||||||||| |||||||||| |||| |||||||    
T  4329143 gaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatct 4329095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 4498766 - 4498814
Alignment:
Q  225 gaacttggaggcatgcttattttcaatttcttgaccacttgtaagatct 273  Q
    ||||||| ||||||||||||||||| |||||||||| |||| |||||||    
T  4498766 gaacttgcaggcatgcttattttcattttcttgaccgcttgaaagatct 4498814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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