View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17033_low_14 (Length: 371)

Name: NF17033_low_14
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17033_low_14
NF17033_low_14
[»] scaffold0057 (1 HSPs)
scaffold0057 (41-359)||(49900-50220)
[»] chr3 (21 HSPs)
chr3 (88-359)||(3857905-3858176)
chr3 (88-308)||(24735824-24736043)
chr3 (85-308)||(29839766-29839988)
chr3 (183-361)||(26041967-26042145)
chr3 (87-359)||(29807930-29808191)
chr3 (133-291)||(44791422-44791580)
chr3 (108-295)||(17612652-17612839)
chr3 (87-294)||(37827342-37827548)
chr3 (126-225)||(42875455-42875554)
chr3 (91-244)||(24435264-24435420)
chr3 (129-293)||(5552058-5552221)
chr3 (88-140)||(26042172-26042224)
chr3 (257-299)||(23217134-23217176)
chr3 (190-299)||(52689599-52689708)
chr3 (259-313)||(44791367-44791421)
chr3 (124-295)||(5104438-5104609)
chr3 (129-232)||(36558870-36558973)
chr3 (160-270)||(36553134-36553244)
chr3 (250-303)||(1659754-1659807)
chr3 (251-303)||(42875556-42875608)
chr3 (265-295)||(6419369-6419399)
[»] chr2 (8 HSPs)
chr2 (88-359)||(15676114-15676385)
chr2 (98-359)||(17841387-17841654)
chr2 (88-308)||(15696801-15697020)
chr2 (91-359)||(12698577-12698835)
chr2 (191-312)||(4622448-4622569)
chr2 (227-303)||(30953891-30953967)
chr2 (259-295)||(25920918-25920954)
chr2 (91-157)||(4622371-4622437)
[»] chr8 (11 HSPs)
chr8 (88-359)||(33359356-33359632)
chr8 (91-359)||(6801382-6801637)
chr8 (87-248)||(41287503-41287663)
chr8 (252-359)||(41137913-41138020)
chr8 (178-308)||(17071177-17071297)
chr8 (178-308)||(17576975-17577095)
chr8 (259-295)||(5200184-5200220)
chr8 (97-180)||(41138057-41138140)
chr8 (265-308)||(41287664-41287707)
chr8 (266-295)||(23399193-23399222)
chr8 (259-295)||(16027739-16027775)
[»] chr5 (12 HSPs)
chr5 (88-359)||(26502597-26502869)
chr5 (88-302)||(42885137-42885350)
chr5 (125-359)||(16855806-16856030)
chr5 (91-310)||(1944925-1945129)
chr5 (172-350)||(15921166-15921344)
chr5 (88-359)||(28246799-28247070)
chr5 (88-238)||(1863840-1863990)
chr5 (95-248)||(16666534-16666686)
chr5 (88-276)||(32903910-32904098)
chr5 (233-303)||(1864575-1864645)
chr5 (265-308)||(16666490-16666533)
chr5 (266-295)||(35796894-35796923)
[»] chr7 (24 HSPs)
chr7 (87-308)||(35445326-35445546)
chr7 (88-308)||(31589779-31589998)
chr7 (125-359)||(43127237-43127471)
chr7 (88-359)||(778353-778624)
chr7 (92-361)||(38031926-38032200)
chr7 (88-359)||(21236541-21236794)
chr7 (190-355)||(21859119-21859284)
chr7 (87-303)||(45884975-45885191)
chr7 (177-335)||(2619676-2619837)
chr7 (126-246)||(2455528-2455648)
chr7 (188-289)||(45689120-45689224)
chr7 (116-295)||(19248798-19248977)
chr7 (126-234)||(16671066-16671174)
chr7 (126-234)||(17645434-17645542)
chr7 (88-299)||(27905293-27905505)
chr7 (92-136)||(21859046-21859090)
chr7 (264-303)||(2455650-2455689)
chr7 (130-295)||(30603686-30603851)
chr7 (88-140)||(2619864-2619915)
chr7 (129-295)||(7844596-7844756)
chr7 (90-295)||(7845966-7846161)
chr7 (259-293)||(23406284-23406318)
chr7 (259-293)||(41349666-41349700)
chr7 (88-116)||(45689282-45689310)
[»] chr4 (19 HSPs)
chr4 (88-308)||(29284735-29284954)
chr4 (86-308)||(44820728-44820949)
chr4 (88-308)||(5486437-5486656)
chr4 (87-359)||(1142970-1143242)
chr4 (88-313)||(27871636-27871860)
chr4 (88-317)||(221081-221297)
chr4 (190-351)||(34442175-34442336)
chr4 (88-314)||(46394666-46394888)
chr4 (87-359)||(52596711-52596967)
chr4 (88-291)||(18902527-18902730)
chr4 (204-308)||(55710511-55710615)
chr4 (173-299)||(51969975-51970101)
chr4 (142-293)||(45439408-45439559)
chr4 (181-293)||(49408420-49408532)
chr4 (191-235)||(18906566-18906610)
chr4 (257-295)||(49411165-49411203)
chr4 (266-295)||(42432764-42432793)
chr4 (186-234)||(56543888-56543937)
chr4 (253-293)||(56543960-56544000)
[»] chr1 (13 HSPs)
chr1 (88-308)||(29267784-29268003)
chr1 (88-348)||(16543531-16543791)
chr1 (88-313)||(3302905-3303130)
chr1 (190-359)||(17145093-17145262)
chr1 (88-293)||(29171863-29172066)
chr1 (169-294)||(12416947-12417071)
chr1 (91-247)||(51003851-51003999)
chr1 (90-295)||(34288230-34288435)
chr1 (258-301)||(17586149-17586192)
chr1 (169-282)||(23298033-23298146)
chr1 (88-147)||(17145002-17145061)
chr1 (249-288)||(24536422-24536461)
chr1 (307-359)||(3303162-3303214)
[»] chr6 (7 HSPs)
chr6 (163-351)||(32923010-32923198)
chr6 (252-351)||(4333635-4333734)
chr6 (160-275)||(28590037-28590152)
chr6 (252-350)||(4333839-4333937)
chr6 (88-284)||(9578485-9578680)
chr6 (91-186)||(4333522-4333617)
chr6 (265-308)||(10972941-10972984)
[»] scaffold0023 (2 HSPs)
scaffold0023 (128-247)||(113552-113671)
scaffold0023 (252-293)||(113522-113563)


Alignment Details
Target: scaffold0057 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 41 - 359
Target Start/End: Complemental strand, 50220 - 49900
Alignment:
Q  41 caccctcattgaaatgtccaactgctcatcacagataaccaagtggctaggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtca 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50220 caccctcattgaaatgtccaactgctcatcacagataaccaagtgg---ggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtca 50124  T
Q  141 tgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggacacggatttgattgtaac 240  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  50123 tgggcatagggtgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccatttttatatggatacggacacggatttgattataac 50024  T
Q  241 catacccacgggtacacatacccgataataaattaagtaaattactaaaatatccttgtatatctt-----atcttattactagaagttgctatcttatt 335  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||  ||||| ||||||||||    
T  50023 catacccacgggtactcatacccgataataaattaagtaaattactaaaatatccttgtatatcttatctgatcttattacttaaagtttctatcttatt 49924  T
Q  336 gaaggaaattttaccgcccaccta 359  Q
    ||||||||||||||||||||||||    
T  49923 gaaggaaattttaccgcccaccta 49900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 88 - 359
Target Start/End: Original strand, 3857905 - 3858176
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    |||||||||||||| |||| ||||||||||||| |||||||||| |||| ||| |||||| |||||||||   ||||||| ||||| |  |||||||||     
T  3857905 taggggtggcaaaagtaccaatgcccacgggtatccgtgggtaatatccatcacgggcacggggcgggtagcgaaacgggtatccatggatataataaac 3858004  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    | |||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| ||||| || | ||||||||||||||||||||||| ||    
T  3858005 gggtatttgactacccattattatatggatacggacacagatttgatagtacccatacccacaggtacccaaatccgataataaattaagtaaattatta 3858104  T
Q  288 aaatatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttaccgcccaccta 359  Q
    |||||||||| |||||||||||||||||||  |||||| || |||||||||| ||||||||||| |||||||    
T  3858105 aaatatccttatatatcttatcttattacttaaagttgttaccttattgaagtaaattttaccgtccaccta 3858176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 88 - 308
Target Start/End: Complemental strand, 24736043 - 24735824
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||| || ||||||  |||||||| ||||| ||||||||| ||     
T  24736043 taggggtggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggcac-ggacgggtagctaaacgggtatccatgagtataattaac 24735945  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||| | ||||||||    
T  24735944 gggtatttgactacccattattatatgaatacggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattacta 24735845  T
Q  288 aaatatccttgtatatcttat 308  Q
    |||||||||| ||||||||||    
T  24735844 aaatatccttatatatcttat 24735824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 85 - 308
Target Start/End: Complemental strand, 29839988 - 29839766
Alignment:
Q  85 ggctaggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataata 184  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||| || ||||||  |||||||| ||||| |  ||||||     
T  29839988 ggctaggggtggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggcac-ggacgggtagctaaacgggtatccatggatataatt 29839890  T
Q  185 aatgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaatta 284  Q
    || | ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||| | |||||    
T  29839889 aacgggtatttgactacccattattatatgaatacggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaatta 29839790  T
Q  285 ctaaaatatccttgtatatcttat 308  Q
    ||||||||||||| ||||||||||    
T  29839789 ctaaaatatccttatatatcttat 29839766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 183 - 361
Target Start/End: Complemental strand, 26042145 - 26041967
Alignment:
Q  183 taaatgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaat 282  Q
    |||| ||||||||||||| ||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||| ||||     
T  26042145 taaacgagtatttgactatccattgttatatgaatacggacacggatttgattgtatccatatccacgggtacccatacccgataataaattaactaaac 26042046  T
Q  283 tactaaaatatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttaccgcccacctatg 361  Q
    ||||||||||||||| |||||||||||||||||||  |||||| || ||||||||||||||||||||| ||||||||||    
T  26042045 tactaaaatatccttatatatcttatcttattacttaaagttgttaccttattgaaggaaattttacctcccacctatg 26041967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 87 - 359
Target Start/End: Original strand, 29807930 - 29808191
Alignment:
Q  87 ctaggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaa 186  Q
    ||||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||| ||||| |||  |||| ||| || |||| | ||||||||    
T  29807930 ctaggggtggcaaaaatactcatgcccacgggtatccatgggtaaaatccgtcacgggcacggggcgagtagctaaatgggtattcacggggataataaa 29808029  T
Q  187 tgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattact 286  Q
    || || |||||||||||||||||||||||||||||||||| ||||||||                |||| |||||||||| |||||||||||||||||||    
T  29808030 tgggtgtttgactacccattattatatggatacggacacgaatttgatt----------------gtacccatacccgatgataaattaagtaaattact 29808113  T
Q  287 aaaatatccttgta-----tatcttatcttattactagaagttgctatcttattgaaggaaattttaccgcccaccta 359  Q
    ||||||||||||||     |||||||||||||||||  || ||| || || ||||||||||||||||||| |||||||    
T  29808114 aaaatatccttgtatatcttatcttatcttattacttaaaattgttacctcattgaaggaaattttaccgtccaccta 29808191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 133 - 291
Target Start/End: Complemental strand, 44791580 - 44791422
Alignment:
Q  133 atccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggacacggatttg 232  Q
    |||||||||||| |  | |||||||  |||||||| | ||||| |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||    
T  44791580 atccgtcatgggtatggagcgggtagttaaacgggtacccacgggtataataaatgggtatttgactatccattattatatggatatggacacggatttg 44791481  T
Q  233 attgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaaat 291  Q
    |||||| |||||||||||||||| ||||||||||||||||||||  |||||||||||||    
T  44791480 attgtatccatacccacgggtacccatacccgataataaattaaacaaattactaaaat 44791422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 295
Target Start/End: Complemental strand, 17612839 - 17612652
Alignment:
Q  108 atgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccatta 207  Q
    |||||| |||||| |||||| |||||||||||||| |||| |||||| ||  |||||||| ||    | ||||||||||||||||||| |||||||||||    
T  17612839 atgcccgcgggtatccgtggataaaatccgtcatgtgcacggggcggatagataaacgggtatttgtgggtataataaatgagtatttaactacccatta 17612740  T
Q  208 ttatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaaatatcc 295  Q
    || ||| || ||||| |||||||||||  || || | ||  ||||||  | |||||| |||||| | |||||||||||||||||||||    
T  17612739 ttttatagacacggatacggatttgatgatacccgtgcctgcgggtatccgtacccgttaataagtgaagtaaattactaaaatatcc 17612652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 87 - 294
Target Start/End: Complemental strand, 37827548 - 37827342
Alignment:
Q  87 ctaggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaa 186  Q
    |||||||||||||||| | || || || |||||| | |||| ||||||| ||||||||||| | |||||||  |||||||| |||| || ||||||||||    
T  37827548 ctaggggtggcaaaaaaatccgtgtccgcgggtatctgtggataaaatctgtcatgggcacggagcgggtagctaaacgggtatccgcgggtataataaa 37827449  T
Q  187 tgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattact 286  Q
      ||||||| |||  || ||| | |||||  ||||| |||||||||||  || || | ||| ||||||  | |||||| ||||||||||||||| |||||    
T  37827448 ctagtatttaact-tccgttactttatgggcacggatacggatttgatgatacccgtgcccgcgggtatccgtacccgttaataaattaagtaatttact 37827350  T
Q  287 aaaatatc 294  Q
    ||||||||    
T  37827349 aaaatatc 37827342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 42875455 - 42875554
Alignment:
Q  126 gggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggacac 225  Q
    |||||||||||||||||| ||||| |||||||  |||| | | ||| ||||||||||||||   ||||||||||| ||||||||||||||||||| ||||    
T  42875455 gggtaaaatccgtcatggacacagagcgggtagctaaatgagtatctacgagtataataaacttgtatttgactatccattattatatggatacgaacac 42875554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 91 - 244
Target Start/End: Complemental strand, 24435420 - 24435264
Alignment:
Q  91 gggtggcaaaaatacccatgcccacgggtacccgtgggtaaa---atccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    ||||| ||||||||| |||  |||||||||   |||||||||   |||| |||||| ||| | |||||||  |||||||| ||||| | ||||||||||     
T  24435420 gggtgacaaaaatactcatatccacgggtatttgtgggtaaatcaatccatcatggacacggagcgggtagttaaacgggtatccatgggtataataaac 24435321  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccata 244  Q
    |  || || |||||||||||||||||||||||||||||  ||||||||||| |||||    
T  24435320 ggataattcactacccattattatatggatacggacacaaatttgattgtacccata 24435264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 293
Target Start/End: Complemental strand, 5552221 - 5552058
Alignment:
Q  129 taaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggacacgga 228  Q
    ||||||||||||||||||| |||||| ||  |||||||| |||| || |||||||||| | |||||| |||| || ||| | ||||||||| ||||||||    
T  5552221 taaaatccgtcatgggcacggggcggataactaaacgggtatccgcgggtataataaacgggtatttaacta-ccgttactttatggatacagacacgga 5552123  T
Q  229 tttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaaatat 293  Q
    ||||||  ||  | | ||| || |||   ||||| | ||||||||||| ||||||||||||||||    
T  5552122 tttgatgatactcgtgcccgcgagtatcaatacctgttaataaattaaataaattactaaaatat 5552058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 26042224 - 26042172
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtca 140  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  26042224 taggggtggcaaaaatacccatgcccacgggtacctgtggataaaatccgtca 26042172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 23217176 - 23217134
Alignment:
Q  257 catacccgataataaattaagtaaattactaaaatatccttgt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23217176 catacccgataataaattaagtaaattactaaaatatccttgt 23217134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 190 - 299
Target Start/End: Complemental strand, 52689708 - 52689599
Alignment:
Q  190 gtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaa 289  Q
    ||||||||||| |||||||| |||||||| |||||| ||||||||  ||    | ||||| ||| | |||| | ||||||||||||||||||||||||||    
T  52689708 gtatttgactagccattattttatggatatggacacagatttgatgatacttgtgcccacaggtgcccatatctgataataaattaagtaaattactaaa 52689609  T
Q  290 atatccttgt 299  Q
    ||||| ||||    
T  52689608 atatctttgt 52689599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 44791421 - 44791367
Alignment:
Q  259 tacccgataataaattaagtaaattactaaaatatccttgtatatcttatcttat 313  Q
    ||||||||||||||||||  |||||||||||||||| || |||||||||||||||    
T  44791421 tacccgataataaattaaacaaattactaaaatatcattatatatcttatcttat 44791367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 124 - 295
Target Start/End: Complemental strand, 5104609 - 5104438
Alignment:
Q  124 gtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgag-tataataaatgagtatttgactacccattattatatggatacgga 222  Q
    |||| |||||||||| ||||||||  ||||||||  |||||| ||| |||  || ||||||||| |||||||| ||||||| ||| | |||||| ||| |    
T  5104609 gtggttaaaatccgtaatgggcacgaggcgggtagctaaacgtgaa-ccagcagatataataaacgagtatttaactacccgttactttatggacacgaa 5104511  T
Q  223 cacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaaatatcc 295  Q
    ||||||||||||  || || |  || |  |||    |||||| ||||||||||||||||||||||||||||||    
T  5104510 cacggatttgatgatacccgtgtccgcatgtatttgtacccgttaataaattaagtaaattactaaaatatcc 5104438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 36558870 - 36558973
Alignment:
Q  129 taaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggacacgga 228  Q
    |||||| ||||| |||||| |||  ||||  |||||||  ||||||| ||||| ||||| |||||||||||||||||| || ||| ||||| ||||| ||    
T  36558870 taaaattcgtcacgggcacggggatggtagctaaacggatatccacgtgtatattaaataagtatttgactacccattgttttatagatacagacacaga 36558969  T
Q  229 tttg 232  Q
    ||||    
T  36558970 tttg 36558973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 270
Target Start/End: Complemental strand, 36553244 - 36553134
Alignment:
Q  160 taaacgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacat 259  Q
    |||||||  ||||||| ||||| ||||| |||||||||||||||||| || ||| ||||| ||||| |||||| |  || || |  |||||| ||| |||    
T  36553244 taaacggatatccacgtgtatattaaataagtatttgactacccattgttttatagatacagacacagatttgctgatacccgtttccacggatacccat 36553145  T
Q  260 acccgataata 270  Q
    |||||||||||    
T  36553144 acccgataata 36553134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 1659807 - 1659754
Alignment:
Q  250 gggtacacatacccgataataaattaagtaaattactaaaatatccttgtatat 303  Q
    |||||| ||||  ||||||||||||||||||||| ||||||||||||| |||||    
T  1659807 gggtacccatattcgataataaattaagtaaattgctaaaatatccttatatat 1659754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 42875556 - 42875608
Alignment:
Q  251 ggtacacatacccgataataaattaagtaaattactaaaatatccttgtatat 303  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||| || |||||    
T  42875556 ggtacccatatccgataataaattaagtaaattacttaaatatctttatatat 42875608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 295
Target Start/End: Complemental strand, 6419399 - 6419369
Alignment:
Q  265 ataataaattaagtaaattactaaaatatcc 295  Q
    |||||||||||||||||||||||||||||||    
T  6419399 ataataaattaagtaaattactaaaatatcc 6419369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 88 - 359
Target Start/End: Complemental strand, 15676385 - 15676114
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    |||||||||||||| |||||||| |||| |||| ||||||||||||||||||| ||||| ||||| ||||  |||||||| | ||||| ||||||| ||     
T  15676385 taggggtggcaaaagtacccatgtccactggtatccgtgggtaaaatccgtcaggggcatagggcaggtagctaaacgggtaaccacgggtataattaac 15676286  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    ||||||||||||||  |||||||||| ||||||| |||| |||||||||||  |||||||||| |||| ||||||||||||||||| |||||||||||||    
T  15676285 gagtatttgactacatattattatatagatacggtcacgaatttgattgtattcatacccacgagtacccatacccgataataaatcaagtaaattacta 15676186  T
Q  288 aaatatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttaccgcccaccta 359  Q
    ||||||| || ||||||||||||||| |||  |||||| || |||||||||||||||||||||| |||||||    
T  15676185 aaatatctttatatatcttatcttatcacttaaagttgttaccttattgaaggaaattttaccggccaccta 15676114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 98 - 359
Target Start/End: Original strand, 17841387 - 17841654
Alignment:
Q  98 aaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttga 197  Q
    ||||||||||| |||| ||||| ||||| | ||||||| ||||||| ||| |||  ||||  ||||| |  ||||||| |||||||||| ||||||||||    
T  17841387 aaaaatacccaagcccgcgggtgcccgttgataaaatctgtcatggacacggggtaggtagctaaacagatatccacgggtataataaacgagtatttga 17841486  T
Q  198 ctacccattattatatggatacggacacggatttgattgtaaccata-cccacgggtacacatacccgataataaattaagtaaattactaaaatatcct 296  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||  ||| |||||||||||||||||||||||||||| ||||||||| |    
T  17841487 ctacccattattatatggatacggacacggatttgattgtacccataccccacgaatacccatacccgataataaattaagtaaattaataaaatatctt 17841586  T
Q  297 tgta-----tatcttatcttattactagaagttgctatcttattgaaggaaattttaccgcccaccta 359  Q
    | ||     |||||||||||||||||  |||||| |||||||||||| ||||||||||||||||||||    
T  17841587 tatatatcttatcttatcttattacttaaagttgttatcttattgaaagaaattttaccgcccaccta 17841654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 88 - 308
Target Start/End: Complemental strand, 15697020 - 15696801
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||| || ||||||  |||||||| ||||| | ||||||| ||     
T  15697020 taggggtggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggcac-ggacgggtagctaaacgggtatccatgggtataattaac 15696922  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||| ||||||| |||||||||||| | ||||||||    
T  15696921 gggtatttgactacccattattatatgaatacggacacggatttgatggtatccatacccacggatacccatacccaataataaattaacttaattacta 15696822  T
Q  288 aaatatccttgtatatcttat 308  Q
    |||||||||| ||||||||||    
T  15696821 aaatatccttatatatcttat 15696801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 91 - 359
Target Start/End: Original strand, 12698577 - 12698835
Alignment:
Q  91 gggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgag 190  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||||| |||||| ||||  |||  |||||||  ||||||| ||||              
T  12698577 gggtagcaaaaatactcatgcccacgggtacccgtggataaaatccgtcacgggcacggggcacgtagttaaacggatatccacgggtat---------- 12698666  T
Q  191 tatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaaa 290  Q
       ||||||| ||||||||||||||||||||||||||||||||||||| | |||| |||| |||| ||||||||||||||||||||||| ||||||||||    
T  12698667 ---ttgactatccattattatatggatacggacacggatttgattgtatc-atactcacgagtacccatacccgataataaattaagtagattactaaaa 12698762  T
Q  291 tatccttgtatatcttatctt-----attactagaagttgctatcttattgaaggaaattttaccgcccaccta 359  Q
    ||||||| |||||||||||||     ||||||  |||||| ||  |||||||||| || |||||||||||||||    
T  12698763 tatccttatatatcttatcttgtcttattacttaaagttgttaatttattgaagg-aagtttaccgcccaccta 12698835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 191 - 312
Target Start/End: Original strand, 4622448 - 4622569
Alignment:
Q  191 tatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaaa 290  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||| |||||||||||||||||||||||||||    
T  4622448 tatttcactatccattattatatggatacggacacgaatttgattgtatccatatccacgggtacccataccagataataaattaagtaaattactaaaa 4622547  T
Q  291 tatccttgtatatcttatctta 312  Q
    |||| || |||| |||||||||    
T  4622548 tatcgttatataacttatctta 4622569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 30953891 - 30953967
Alignment:
Q  227 gatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaaatatccttgtatat 303  Q
    ||||||||||||  |||||||||| |||| ||||||||||||||||||||||||||||||||| ||| ||| |||||    
T  30953891 gatttgattgtactcatacccacgagtacccatacccgataataaattaagtaaattactaaattattcttatatat 30953967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 25920954 - 25920918
Alignment:
Q  259 tacccgataataaattaagtaaattactaaaatatcc 295  Q
    |||||| ||||||||||||||||||||||||||||||    
T  25920954 tacccgttaataaattaagtaaattactaaaatatcc 25920918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 4622371 - 4622437
Alignment:
Q  91 gggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggta 157  Q
    |||||||||||||||||| ||||| | ||||| |||||||||||| | || ||| || |||||||||    
T  4622371 gggtggcaaaaatacccaagcccatgagtacctgtgggtaaaatctgccacgggtacggggcgggta 4622437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 88 - 359
Target Start/End: Complemental strand, 33359632 - 33359356
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    |||| ||||||||||||| ||||||||||||||   ||||| |||||||||||||||||| ||| |||||   ||||||| ||||||| ||||||| ||     
T  33359632 taggcgtggcaaaaatactcatgcccacgggtatttgtgggcaaaatccgtcatgggcacggggtgggtagcaaaacgggtatccacgggtataatgaac 33359533  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| ||| |||||| ||||||| ||||||||||||||||    
T  33359532 gggtatttgactacccattattatatggatacgggcacggatttgattatatccatacccacggatacccatacctgataatatattaagtaaattacta 33359433  T
Q  288 aaatatccttgtatatc-----ttatcttattactagaagttgctatcttattgaaggaaattttaccgcccaccta 359  Q
    |||||||||| ||||||     |||||||||||||  |||||| || ||||||||| ||||||||||||||||||||    
T  33359432 aaatatccttatatatcttatattatcttattacttaaagttgttaccttattgaatgaaattttaccgcccaccta 33359356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 91 - 359
Target Start/End: Complemental strand, 6801637 - 6801382
Alignment:
Q  91 gggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgag 190  Q
    |||||||||||||||||||||||||  |||| ||||||||||||||||||  ||||| ||||| |||  |||||||| ||||||||||||              
T  6801637 gggtggcaaaaatacccatgcccacatgtactcgtgggtaaaatccgtcacaggcacggggcgagtagctaaacgggtatccacgagtat---------- 6801548  T
Q  191 tatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaaa 290  Q
       ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||  | ||||||||| || |||||    
T  6801547 ---ttgactacccattattatatggatacggatacggatttgattgtacccatacccacgggtactcatacccgataagcacttaagtaaaatattaaaa 6801451  T
Q  291 tatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttaccgcccaccta 359  Q
    ||| ||| ||||||||||||||| |||  |||||| || |||||||||| ||||||||||| |||||||    
T  6801450 tattcttatatatcttatcttataacttaaagttgttaccttattgaagaaaattttaccgtccaccta 6801382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 87 - 248
Target Start/End: Original strand, 41287503 - 41287663
Alignment:
Q  87 ctaggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaa 186  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||| || ||||||  |||||||| ||||| |  |||||| ||    
T  41287503 ctaggggtggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggcac-ggacgggtagctaaacgggtatccatggatataattaa 41287601  T
Q  187 tgagtatttgactacccattattatatggatacggacacggatttgattgtaaccataccca 248  Q
     | ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  41287602 cgggtatttgactacccattattatatgaatacggacacggatttgatggtacccataccca 41287663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 359
Target Start/End: Complemental strand, 41138020 - 41137913
Alignment:
Q  252 gtacacatacccgataataaattaagtaaattactaaaatatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttaccg 351  Q
    |||| |||||||||||||||||||| ||| ||| |||||||||||| || ||||||||||||||||  || ||| || |||||||||| |||||||||||    
T  41138020 gtacccatacccgataataaattaaataatttattaaaatatccttatacatcttatcttattacttaaaattgttaccttattgaagcaaattttaccg 41137921  T
Q  352 cccaccta 359  Q
     |||||||    
T  41137920 tccaccta 41137913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 308
Target Start/End: Original strand, 17071177 - 17071297
Alignment:
Q  178 tataataaatgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaag 277  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||| | |            |||| ||||||||||| ||| |||||    
T  17071177 tataataaatgggtatttgactacccattattatatggatacagacatggatttgattttga----------ttgtacccatacccgatagtaagttaag 17071266  T
Q  278 taaattactaaaatatccttgtatatcttat 308  Q
    |||||||||||||||||||  ||||||||||    
T  17071267 taaattactaaaatatcctaatatatcttat 17071297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 308
Target Start/End: Complemental strand, 17577095 - 17576975
Alignment:
Q  178 tataataaatgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaag 277  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||| | |            |||| ||||||||||| ||| |||||    
T  17577095 tataataaatgggtatttgactacccattattatatggatacagacatggatttgattttga----------ttgtacccatacccgatagtaagttaag 17577006  T
Q  278 taaattactaaaatatccttgtatatcttat 308  Q
    |||||||||||||||||||  ||||||||||    
T  17577005 taaattactaaaatatcctaatatatcttat 17576975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 5200220 - 5200184
Alignment:
Q  259 tacccgataataaattaagtaaattactaaaatatcc 295  Q
    |||||| ||||||||||||||||||||||||||||||    
T  5200220 tacccgttaataaattaagtaaattactaaaatatcc 5200184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 180
Target Start/End: Complemental strand, 41138140 - 41138057
Alignment:
Q  97 caaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtat 180  Q
    ||||||||||||| ||||| |||| || |||||||||||| ||| |||||||| |||| ||  |||||||| || |||| ||||    
T  41138140 caaaaatacccatacccacaggtatccatgggtaaaatccatcacgggcacagagcggatagttaaacgggtattcacgggtat 41138057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 308
Target Start/End: Original strand, 41287664 - 41287707
Alignment:
Q  265 ataataaattaagtaaattactaaaatatccttgtatatcttat 308  Q
    |||||||||||| | |||||||||||||||||| ||||||||||    
T  41287664 ataataaattaacttaattactaaaatatccttatatatcttat 41287707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Complemental strand, 23399222 - 23399193
Alignment:
Q  266 taataaattaagtaaattactaaaatatcc 295  Q
    ||||||||||||||||||||||||||||||    
T  23399222 taataaattaagtaaattactaaaatatcc 23399193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 16027739 - 16027775
Alignment:
Q  259 tacccgataataaattaagtaaattactaaaatatcc 295  Q
    |||||| |||||||| |||||||||||||||||||||    
T  16027739 tacccgttaataaatcaagtaaattactaaaatatcc 16027775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 7e-68; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 88 - 359
Target Start/End: Original strand, 26502597 - 26502869
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| | ||| |   |||||  |||||| | ||||||| ||||||||||     
T  26502597 taggggtggcaaaaatacacatgcccacgggtacccgtgggtaagatctgtcatagacacggaatgggtagctaaacgagtatccacgggtataataaac 26502696  T
Q  188 gagtatttgactacccattattatatggatac--ggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattac 285  Q
    | |||||||||||||||||| ||||||||||   ||||||| |||||||||||  ||| ||||||||||| ||||||||||| |||||||| ||||||||    
T  26502697 gggtatttgactacccattagtatatggatatatggacacgaatttgattgtactcat-cccacgggtacccatacccgatattaaattaactaaattac 26502795  T
Q  286 taaaatatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttaccgcccaccta 359  Q
    |||||||| ||| |||||||||||||||||||  |||||| || ||||||||||||||||||||| ||||||||    
T  26502796 taaaatattcttatatatcttatcttattacttaaagttgttaccttattgaaggaaattttaccccccaccta 26502869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 88 - 302
Target Start/End: Original strand, 42885137 - 42885350
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||| || ||||||  |||||||| ||||| | ||||||| ||     
T  42885137 taggggtggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggcac-ggacgggtagctaaacgggtatccatgggtataattaac 42885235  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    | ||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||| | ||||||||    
T  42885236 gggtatttgactacccattattatatgaatatggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattacta 42885335  T
Q  288 aaatatccttgtata 302  Q
    |||||||||| ||||    
T  42885336 aaatatccttatata 42885350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 125 - 359
Target Start/End: Complemental strand, 16856030 - 16855806
Alignment:
Q  125 tgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggaca 224  Q
    |||||||||||||||| |||||| | | |||||  |||||| | |||||| ||||||||||| | ||||||||||| ||||||||||||||||| |||||    
T  16856030 tgggtaaaatccgtcacgggcaccgagtgggtagctaaacgagtatccacaagtataataaacgggtatttgactatccattattatatggatatggaca 16855931  T
Q  225 cggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaaatatccttgtatatcttatcttattactagaagtt 324  Q
    ||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||||||          |||||||||||||||    | |||    
T  16855930 cggatttgattgtattcatacctacgggtacccatacccgataataaattaagtaaattactaaaa----------tatcttatcttattaagtaatgtt 16855841  T
Q  325 gctatcttattgaaggaaattttaccgcccaccta 359  Q
    | |||||||||||||||||||||||||||||||||    
T  16855840 gttatcttattgaaggaaattttaccgcccaccta 16855806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 91 - 310
Target Start/End: Original strand, 1944925 - 1945129
Alignment:
Q  91 gggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgag 190  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||      |||  ||||||  ||||||||          ||||||||||| |    
T  1944925 gggtggcaaaaatactcatgcccacgggtacccgtgggtaaaatccgtca------cagaacgggtaactaaacggg----------tataataaatggg 1945008  T
Q  191 tatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacggg-tacacatacccgataataaattaagtaaattactaaa 289  Q
    |||||||| ||  |||||||||||||||||||||||||||| |||||| ||||| ||||||| ||| ||||||| ||||||||||||||| |||||||||    
T  1945009 tatttgaccacatattattatatggatacggacacggatttaattgtatccatatccacgggatacccatacccaataataaattaagtatattactaaa 1945108  T
Q  290 atatccttgtatatcttatct 310  Q
    |||||||| ||||||||||||    
T  1945109 atatccttatatatcttatct 1945129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 172 - 350
Target Start/End: Original strand, 15921166 - 15921344
Alignment:
Q  172 cacgagtataataaatgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataa 271  Q
    ||||||||||||||| | ||||||||||||  ||||||||||| |||||||||  ||||||||||||  |||| ||| | |||||||||||| |||||||    
T  15921166 cacgagtataataaacgggtatttgactacatattattatatgaatacggacatagatttgattgtactcatatccatgtgtacacataccctataataa 15921265  T
Q  272 attaagtaaattactaaaatatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttacc 350  Q
    ||||||||||||| |||||||  ||| ||||||||||||||||| |  |||||| || |||||||||||||||||||||    
T  15921266 attaagtaaattattaaaataatcttatatatcttatcttattatttaaagttgttaccttattgaaggaaattttacc 15921344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 88 - 359
Target Start/End: Original strand, 28246799 - 28247070
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    ||||||||||||||||||||||| ||||||||||||||  |||||||  |||| || ||| |||||| ||  |||||||| ||||| |  |||||||||     
T  28246799 taggggtggcaaaaatacccatgtccacgggtacccgtaagtaaaatttgtcacggacacggggcggatagctaaacgggtatccatgtatataataaac 28246898  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    | |||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||          ||||||| || ||||||||||||||| ||||    
T  28246899 gggtatttgactacccattattatatagatacggacacagatttgattgtatccatacc----------catacccaatgataaattaagtaaatgacta 28246988  T
Q  288 aaatatccttgta----------tatcttatcttattactagaagttgctatcttattgaaggaaattttaccgcccaccta 359  Q
    ||| ||| || ||          |||||||||||||||||  |||||| || ||||||||||||||||||||||| ||||||    
T  28246989 aaacatctttatatatcttactttatcttatcttattacttaaagttgttaccttattgaaggaaattttaccgctcaccta 28247070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 1863840 - 1863990
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    ||||||||||||||||| | ||| |||||||||||||   |||||||| |||||| | ||||||| ||||  |||||||| |||||||||||||||||||    
T  1863840 taggggtggcaaaaatatcaatgtccacgggtacccgcaagtaaaatctgtcatgagtacagggcaggtagctaaacgggtatccacgagtataataaat 1863939  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgta 238  Q
    | |||||| |||| ||||||||||||||||||| ||||| |||||||||||    
T  1863940 gggtatttaactatccattattatatggatacgaacacgaatttgattgta 1863990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 95 - 248
Target Start/End: Complemental strand, 16666686 - 16666534
Alignment:
Q  95 ggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatt 194  Q
    |||||||||||||||||||| ||||||||| ||||||||||| ||| ||| || || ||||||  |||||||| ||||| | ||||||| || | |||||    
T  16666686 ggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggtac-ggacgggtagctaaacgggtatccatgggtataattaacgggtatt 16666588  T
Q  195 tgactacccattattatatggatacggacacggatttgattgtaaccataccca 248  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  16666587 tgactacccattattatatgaatacggacacggatttgatggtacccataccca 16666534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 88 - 276
Target Start/End: Complemental strand, 32904098 - 32903910
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    |||||||||||||||||| ||||| ||| ||||| ||||| |||||||||||||||| ||||| | | ||  ||||  |  ||| | | ||||||||||     
T  32904098 taggggtggcaaaaatactcatgctcacaggtactcgtggataaaatccgtcatgggtacaggacagatagttaaaaagatatctatgggtataataaac 32903999  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaa 276  Q
    | ||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| |||  ||||| |||||| |||||||||||||    
T  32903998 gggtattcgactacccatcattatatggatacggacacggatttgattgtatccatatccataggtactcatacctgataataaattaa 32903910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 1864575 - 1864645
Alignment:
Q  233 attgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaaatatccttgtatat 303  Q
    |||||| |||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  1864575 attgtacccataccatcgggtacccatacccgataataaattaagtaaattactaaaatatccttatatat 1864645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 16666533 - 16666490
Alignment:
Q  265 ataataaattaagtaaattactaaaatatccttgtatatcttat 308  Q
    |||||||||||| | |||||||||||||||||| ||||||||||    
T  16666533 ataataaattaacttaattactaaaatatccttatatatcttat 16666490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Complemental strand, 35796923 - 35796894
Alignment:
Q  266 taataaattaagtaaattactaaaatatcc 295  Q
    ||||||||||||||||||||||||||||||    
T  35796923 taataaattaagtaaattactaaaatatcc 35796894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 87 - 308
Target Start/End: Complemental strand, 35445546 - 35445326
Alignment:
Q  87 ctaggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaa 186  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||| || ||||||  |||||||| ||||| | ||||||| ||    
T  35445546 ctaggggtggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggcac-ggacgggtagctaaacgggtatccatgggtataattaa 35445448  T
Q  187 tgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattact 286  Q
     | ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||| | |||||||    
T  35445447 cgggtatttgactacccattattatatgaatacggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattact 35445348  T
Q  287 aaaatatccttgtatatcttat 308  Q
    ||||||||||| ||||||||||    
T  35445347 aaaatatccttatatatcttat 35445326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 88 - 308
Target Start/End: Original strand, 31589779 - 31589998
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||| ||| |||||| || ||||||  |||||||| ||||| | ||||||| ||     
T  31589779 taggggtggcaaaaatacccatgcccatggatacccgtgggtaaaatccatcacgggcac-ggacgggtagctaaacgggtatccatgggtataattaac 31589877  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||| | ||||||||    
T  31589878 gggtatttgactacccattattatatgaatacggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattacta 31589977  T
Q  288 aaatatccttgtatatcttat 308  Q
    |||||||||| ||||||||||    
T  31589978 aaatatccttatatatcttat 31589998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 125 - 359
Target Start/End: Complemental strand, 43127471 - 43127237
Alignment:
Q  125 tgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggaca 224  Q
    |||||||||||||||| |||||| || ||| ||  ||| |||| ||||| | |||||||||||| |||||||||||  ||||||||||||||||||||||    
T  43127471 tgggtaaaatccgtcacgggcacgggacggatagctaagcgggtatccatgggtataataaatgggtatttgactattcattattatatggatacggaca 43127372  T
Q  225 cggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaaatatccttgtatatcttatcttattactagaagtt 324  Q
    |||||||||||||| ||||||||||||||||  ||||| ||||||||||||| |||| ||||||||||||||| |||||||||| | |||| |  |||||    
T  43127371 cggatttgattgtatccatacccacgggtacctataccagataataaattaactaaactactaaaatatccttatatatcttatttaattatttaaagtt 43127272  T
Q  325 gctatcttattgaaggaaattttaccgcccaccta 359  Q
    | ||||||||||||| |||||||||| | ||||||    
T  43127271 gttatcttattgaagaaaattttacctctcaccta 43127237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 88 - 359
Target Start/End: Original strand, 778353 - 778624
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    |||||||| |||||||||||||| ||||||||||  |||||||| |||| ||| || ||| |||||| ||  || ||||| ||||| | || |||||||     
T  778353 taggggtgccaaaaatacccatgtccacgggtacatgtgggtaatatccatcacggacacggggcggatatttagacgggtatccatgggtgtaataaac 778452  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    |  ||||||| || |||||||||||| ||||  ||||||||||||||||||  ||||| ||||| ||| |||||||||||||||||||||||||| ||||    
T  778453 ggatatttgattatccattattatatagatatagacacggatttgattgtactcatactcacggatacccatacccgataataaattaagtaaatgacta 778552  T
Q  288 aaatatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttaccgcccaccta 359  Q
    |||||| ||| |||||||||||| ||||||  |||||| || |||||||||||||||||||||| |||||||    
T  778553 aaatattcttatatatcttatctaattacttaaagttgttaccttattgaaggaaattttaccggccaccta 778624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 92 - 361
Target Start/End: Original strand, 38031926 - 38032200
Alignment:
Q  92 ggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagt 191  Q
    |||||||||||||| |||| ||| || |||| || | ||||||||||||||||||| | |||| ||  ||| |||| ||||||||||||||||||   ||    
T  38031926 ggtggcaaaaatactcatgtccatggatacc-gtagataaaatccgtcatgggcac-gagcggatagctaa-cgggtatccacgagtataataaacaggt 38032022  T
Q  192 atttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaaat 291  Q
    ||||||||||  ||| ||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| |||| |||||||||    
T  38032023 atttgactacatattgttatatggatatggacacggatttgattgtacccacacccacgggtacccatacccgataataaattaactaaactactaaaat 38032122  T
Q  292 atcct--------tgtatatcttatcttattactagaagttgctatcttattgaaggaaattttaccgcccacctatg 361  Q
     ||||        | |||||||||||||||||||  |||||| || ||||||||||||||||||||| ||||||||||    
T  38032123 ttccttatatatatatatatcttatcttattacttaaagttgttaccttattgaaggaaattttacctcccacctatg 38032200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 88 - 359
Target Start/End: Original strand, 21236541 - 21236794
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||| ||  |||||  |||||||| ||| | |  |||||||||     
T  21236541 taggggtggcaaaaatacccatgcccacggatacccgtgggtaaaatc-gtcacgggcacgggatgggtagctaaacgggtatcaatggttataataaac 21236639  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    | ||||||||||| |||||||||||||||||||||||||||||||||| || |                |||||||||||||||||||||||||||| ||    
T  21236640 gggtatttgactatccattattatatggatacggacacggatttgattctatc----------------catacccgataataaattaagtaaattatta 21236723  T
Q  288 aaatatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttaccgcccaccta 359  Q
    ||| |||||| |||||||||||||||||||  |||||| || |||||| ||| ||||||||||| |||||||    
T  21236724 aaa-atccttatatatcttatcttattacttaaagttgttaccttattaaagaaaattttaccgtccaccta 21236794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 190 - 355
Target Start/End: Original strand, 21859119 - 21859284
Alignment:
Q  190 gtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaa 289  Q
    |||||||| || ||| ||||||||||||||||||||||||||||||||| | |||||||||||||  |||||||||||||||||||||||||||||||||    
T  21859119 gtatttgattatccactattatatggatacggacacggatttgattgtatcaatacccacgggtatccatacccgataataaattaagtaaattactaaa 21859218  T
Q  290 atatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttaccgccca 355  Q
    ||||  || |||||||||| ||||||||   ||||| || |||||||||| |||||||||||||||    
T  21859219 atatttttatatatcttatattattacttatagttgttaccttattgaagaaaattttaccgccca 21859284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 87 - 303
Target Start/End: Original strand, 45884975 - 45885191
Alignment:
Q  87 ctaggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaa 186  Q
    ||||||||| ||||||||||||||||||||||| ||||  |||||||||||||| ||  || || | ||||  |||||||  ||||||  ||||||||||    
T  45884975 ctaggggtgacaaaaatacccatgcccacgggtgcccgcaggtaaaatccgtcacggaaacgggacaggtagctaaacggatatccacatgtataataaa 45885074  T
Q  187 tgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattact 286  Q
    ||||||||||||| || |  |||| ||||||||  ||||  |||||||| || |||| |||||| |||| ||||||||||||||||||||| ||||||||    
T  45885075 tgagtatttgactcccaaaaattacatggatacatacacaaatttgattatacccatgcccacgagtacccatacccgataataaattaagcaaattact 45885174  T
Q  287 aaaatatccttgtatat 303  Q
    ||||||||||| |||||    
T  45885175 aaaatatccttatatat 45885191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 177 - 335
Target Start/End: Complemental strand, 2619837 - 2619676
Alignment:
Q  177 gtataataaatgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacaca---tacccgataataaat 273  Q
    |||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||| ||||| |||| ||||||||||| ||   ||| |||||||||||    
T  2619837 gtataataaacgagtatttgactatccattattatatggatacagacacagatttggttgtacccatccccacgggtacccatattacacgataataaat 2619738  T
Q  274 taagtaaattactaaaatatccttgtatatcttatcttattactagaagttgctatcttatt 335  Q
    |||||||||||||||||||||| | |||||||||||||||||||  |||||| || ||||||    
T  2619737 taagtaaattactaaaatatccatatatatcttatcttattacttaaagttgttaacttatt 2619676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 2455528 - 2455648
Alignment:
Q  126 gggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggacac 225  Q
    ||||||||||||||| ||  || |||| ||||  ||||| || ||||||| |||||  ||| | | ||||||||||||||||||||||| |||||||||     
T  2455528 gggtaaaatccgtcacggatacggggcaggtagctaaacaggtatccacgggtatacgaaacgggcatttgactacccattattatatgaatacggacat 2455627  T
Q  226 ggatttgattgtaaccatacc 246  Q
    ||||||||||||| |||||||    
T  2455628 ggatttgattgtacccatacc 2455648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 188 - 289
Target Start/End: Complemental strand, 45689224 - 45689120
Alignment:
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtac----acatacccgataataaattaagtaaatt 283  Q
    ||||||||||||| || |||||||||||||| ||||||| |||||| |||| |||||| |||||||||    | ||||||||||||||| ||||||||||    
T  45689224 gagtatttgactatccgttattatatggatatggacacgaatttga-tgtatccatactcacgggtacccatatatacccgataataaactaagtaaatt 45689126  T
Q  284 actaaa 289  Q
    ||||||    
T  45689125 actaaa 45689120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 295
Target Start/End: Complemental strand, 19248977 - 19248798
Alignment:
Q  116 gggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccattattatatgg 215  Q
    ||||| ||| || ||||||| |||||||||||| | ||||||  |||||||  | ||||  |||||||||||| |||||| ||||||| ||| | |||||    
T  19248977 gggtatccgcggataaaatctgtcatgggcacatgacgggtagctaaacggatacccacaggtataataaatgggtatttaactacccgttactttatgg 19248878  T
Q  216 atacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaaatatcc 295  Q
    | ||||| |||||||||||  || |  |  || | ||||  |||||||| |||||||||||||||||||||||| |||||    
T  19248877 acacggatacggatttgatgatatcggtgtccgcaggtatccatacccgttaataaattaagtaaattactaaattatcc 19248798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 16671066 - 16671174
Alignment:
Q  126 gggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggacac 225  Q
    |||||||||||||||||||||| |||||||||  ||| || | | || ||||||||||||| | |||||| ||||||||||| |  ||||| || |||||    
T  16671066 gggtaaaatccgtcatgggcacggggcgggtagctaatcgagtacccgcgagtataataaacgggtatttaactacccattacttaatggacactgacac 16671165  T
Q  226 ggatttgat 234  Q
    |||||||||    
T  16671166 ggatttgat 16671174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 17645434 - 17645542
Alignment:
Q  126 gggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggacac 225  Q
    |||||||||||||||||||||| |||||||||  ||| || | | || ||||||||||||| | |||||| ||||||||||| |  ||||| || |||||    
T  17645434 gggtaaaatccgtcatgggcacggggcgggtagctaatcgagtacccgcgagtataataaacgggtatttaactacccattacttaatggacactgacac 17645533  T
Q  226 ggatttgat 234  Q
    |||||||||    
T  17645534 ggatttgat 17645542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 299
Target Start/End: Complemental strand, 27905505 - 27905293
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacaggg-cgggtacgtaaacgggaatccacgagtataataaa 186  Q
    ||||||||||||||| || |||||| || |||||||| | | |||||  |||| |||||| ||| | ||||| |||||  | ||  ||  |||||||| |    
T  27905505 taggggtggcaaaaacactcatgcctacaggtacccgcgtgaaaaatttgtcacgggcaccggggcaggtacctaaacaagtatttacatgtataataca 27905406  T
Q  187 tgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattact 286  Q
    || |||||||||||| |||||||   || ||| |||||||||||||||  || || | |||| |||||  |||| ||| ||||||||||||||||||||     
T  27905405 tgggtatttgactactcattatttgttgaatatggacacggatttgatgatacccgttcccatgggtatccatatccgttaataaattaagtaaattacg 27905306  T
Q  287 aaaatatccttgt 299  Q
    |||| ||||||||    
T  27905305 aaaacatccttgt 27905293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 21859046 - 21859090
Alignment:
Q  92 ggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatcc 136  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||    
T  21859046 ggtggcaaaaatacacatgcccacgggtactcgtgggtaaaatcc 21859090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 2455650 - 2455689
Alignment:
Q  264 gataataaattaagtaaattactaaaatatccttgtatat 303  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  2455650 gataataaattaagtaaattactaaaatatccttatatat 2455689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 295
Target Start/End: Original strand, 30603686 - 30603851
Alignment:
Q  130 aaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggacacggat 229  Q
    |||||||||||||||||| |||||||||  |||| | | | || || |||||||||| | |||||| || |||| ||| |  ||||| ||  | ||||||    
T  30603686 aaaatccgtcatgggcacggggcgggtagctaaatgagtagccgcgggtataataaacgggtatttaacaacccgttacttcatggacacaaatacggat 30603785  T
Q  230 ttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaaatatcc 295  Q
    |||||  || || | ||| | ||||  | |||||| |||||||||| |||||||||||||||||||    
T  30603786 ttgatgatacccgtgcccgctggtatccgtacccgttaataaattatgtaaattactaaaatatcc 30603851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 2619915 - 2619864
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtca 140  Q
    |||||| |||||||||||||||||||  ||||||||||||||||||||| |||    
T  2619915 taggggcggcaaaaatacccatgccc-tgggtacccgtgggtaaaatccctca 2619864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 295
Target Start/End: Complemental strand, 7844756 - 7844596
Alignment:
Q  129 taaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggacacgga 228  Q
    ||||||||||||||||||| |||   |||  ||||| || | || || ||||||| || | |||||| |||| || ||||| |||||| || ||||||||    
T  7844756 taaaatccgtcatgggcacggggtaagtagttaaacaggtacccgcgggtataattaaagggtatttaactaaccgttattttatggagacagacacgga 7844657  T
Q  229 tttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaaatatcc 295  Q
    ||||||  || ||  |||| ||||||       ||| ||||||||||||||||||||||||||||||    
T  7844656 tttgatgatacccgcacccgcgggtat------ccgttaataaattaagtaaattactaaaatatcc 7844596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 295
Target Start/End: Complemental strand, 7846161 - 7845966
Alignment:
Q  90 ggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatga 189  Q
    ||||||||||||| |  | ||||| |||||| | | || |||||||||||||||||| ||||| ||||  |||||  | | || |  ||||||| || |     
T  7846161 ggggtggcaaaaaaattcgtgcccgcgggtatctgcggataaaatccgtcatgggcatagggcaggtagttaaacaagtacccgcaggtataattaaagg 7846062  T
Q  190 gtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaa 289  Q
    |||||| ||||||| ||||| |||||| || ||||||||||||||           || ||||||  | |||| | ||||||||||||||||||||||||    
T  7846061 gtatttaactacccgttattttatggacacagacacggatttgatg----------ccgcgggtatccgtacctgttaataaattaagtaaattactaaa 7845972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 293
Target Start/End: Original strand, 23406284 - 23406318
Alignment:
Q  259 tacccgataataaattaagtaaattactaaaatat 293  Q
    |||||| ||||||||||||||||||||||||||||    
T  23406284 tacccgttaataaattaagtaaattactaaaatat 23406318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 293
Target Start/End: Original strand, 41349666 - 41349700
Alignment:
Q  259 tacccgataataaattaagtaaattactaaaatat 293  Q
    |||||||||||||||||| ||||||||||||||||    
T  41349666 tacccgataataaattaaataaattactaaaatat 41349700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 45689310 - 45689282
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacg 116  Q
    |||||||||||||||||||||||||||||    
T  45689310 taggggtggcaaaaatacccatgcccacg 45689282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 88 - 308
Target Start/End: Original strand, 29284735 - 29284954
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||| || ||||||  |||||||| ||||| | ||||||| ||     
T  29284735 taggggtggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggcac-ggacgggtagctaaacgggtatccatgggtataattaac 29284833  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||| | ||||||||    
T  29284834 gggtatttgactacccattattatatgaatacggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattacta 29284933  T
Q  288 aaatatccttgtatatcttat 308  Q
    |||||||||| ||||||||||    
T  29284934 aaatatccttatatatcttat 29284954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 86 - 308
Target Start/End: Complemental strand, 44820949 - 44820728
Alignment:
Q  86 gctaggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataa 185  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||| ||| |||||| || ||||||  |||||||| ||||| | ||||||| |    
T  44820949 gctaggggtggcaaaaatacccatgcccatggatacccgcgggtaaaatccatcacgggcac-ggacgggtagctaaacgggtatccatgggtataatta 44820851  T
Q  186 atgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattac 285  Q
    | | ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||| | ||||||    
T  44820850 acgggtatttgactacccattattatatgaatacggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattac 44820751  T
Q  286 taaaatatccttgtatatcttat 308  Q
    |||||||||||| ||||||||||    
T  44820750 taaaatatccttatatatcttat 44820728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 88 - 308
Target Start/End: Original strand, 5486437 - 5486656
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    ||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||| |||||| || ||||||  |||||||| ||||| | ||||||| ||     
T  5486437 taggggtggcaaaaatatccatgcccatgggtacccgcgggtaaaatccatcacgggcac-ggacgggtagctaaacgggtatccatgggtataattaac 5486535  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||| | ||||||||    
T  5486536 gggtatttgactacccattattatatgaatacggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattacta 5486635  T
Q  288 aaatatccttgtatatcttat 308  Q
    |||||||||| ||||||||||    
T  5486636 aaatatccttatatatcttat 5486656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 87 - 359
Target Start/End: Original strand, 1142970 - 1143242
Alignment:
Q  87 ctaggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaa 186  Q
    ||||| |||||||| |||| ||| |||||| |||||||||||||||||||||||  | ||| || ||||||  |||||||  ||||||  ||||||||||    
T  1142970 ctaggagtggcaaacatactcatacccacgagtacccgtgggtaaaatccgtcaccgacacgggacgggtagctaaacggatatccacaggtataataaa 1143069  T
Q  187 tgagtatttgactacccattattatatggatacggacacggatttgatt-gtaaccatacccacgggtacacatacccgataataaattaagtaaattac 285  Q
     | ||||||||||||||||||||||||||| ||| |||   |||||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||    
T  1143070 cgggtatttgactacccattattatatggacacgaacatatatttgatttgtatccatacccacgg-tacccatacccgataataaattaagtaaattac 1143168  T
Q  286 taaaatatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttaccgcccaccta 359  Q
    || ||||||||| ||||||||||| |||||||  |||||| || |||||||||||||||||| | |||||||||    
T  1143169 tagaatatccttatatatcttatcctattacttaaagttgttaccttattgaaggaaattttgctgcccaccta 1143242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 88 - 313
Target Start/End: Original strand, 27871636 - 27871860
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    |||||||||||||||||||||||  ||||| || | |||||||||||||||||  |  |  |||||||||| |||||||| || ||||||||||||||||    
T  27871636 taggggtggcaaaaatacccatgttcacggatatctgtgggtaaaatccgtcacagatatggggcgggtac-taaacgggtattcacgagtataataaat 27871734  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    | ||||||||||| ||||||||||||||||||||||||  |||||||||||  |||||| |||||||| |||| ||||||||||||||||||||||||||    
T  27871735 gggtatttgactatccattattatatggatacggacacaaatttgattgtactcatacctacgggtacgcatatccgataataaattaagtaaattacta 27871834  T
Q  288 aaatatccttgtatatcttatcttat 313  Q
    |||||| ||| |||||||||||||||    
T  27871835 aaatattcttatatatcttatcttat 27871860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 88 - 317
Target Start/End: Original strand, 221081 - 221297
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    |||||||| ||||||||| |||| ||||||||  ||||||||||||||| | |||||||||||| |||||  |||||| | ||||||| ||||           
T  221081 taggggtgacaaaaatactcatgtccacgggtgtccgtgggtaaaatccattatgggcacagggtgggtagctaaacgagtatccacgggtat------- 221173  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  221174 ------ttgactacccattattatatggatacggacacggatttgattgtatccatacccatgggtacacataccctataataaattaagtaaattacta 221267  T
Q  288 aaatatccttgtatatcttatcttattact 317  Q
    |||||||||| |||||||||| ||||||||    
T  221268 aaatatccttatatatcttatattattact 221297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 190 - 351
Target Start/End: Original strand, 34442175 - 34442336
Alignment:
Q  190 gtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaa 289  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| ||||    
T  34442175 gtattagactacccattattatatggatatggacacggatttgattgtacccatatccacgggtacccatacccgataataaattaagtaaattattaaa 34442274  T
Q  290 atatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttaccg 351  Q
    |||||||| ||||||||||||||||| |  || ||| || ||||||||||||||||||||||    
T  34442275 atatccttatatatcttatcttattatttaaaattgttaccttattgaaggaaattttaccg 34442336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 46394666 - 46394888
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    ||||||||||||||||||| ||| |||||||    |||||||||||||||||| ||| || || ||| ||  ||| |||| ||||||| |||||||||||    
T  46394666 taggggtggcaaaaatacctatgtccacggg----cgtgggtaaaatccgtcacggggacgggacggatagctaagcgggtatccacgtgtataataaat 46394761  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    ||||||||||||| | ||||||||||| ||| ||||||||||||||||||| | ||||| |||| ||  |||||||||| ||||||||||||||| ||||    
T  46394762 gagtatttgactatctattattatatgaatatggacacggatttgattgtatctatacctacggatatccatacccgatgataaattaagtaaatgacta 46394861  T
Q  288 aaatatccttgtatatcttatcttatt 314  Q
    ||||||| || |||||||||| |||||    
T  46394862 aaatatctttatatatcttattttatt 46394888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 87 - 359
Target Start/End: Original strand, 52596711 - 52596967
Alignment:
Q  87 ctaggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaa 186  Q
    |||||| |||||||||||||||||||||||||||||| ||| |||||||||||| |  ||| | |||||||  |||||||| ||||||  ||||||||||    
T  52596711 ctagggatggcaaaaatacccatgcccacgggtacccatggataaaatccgtcacgaacacggagcgggtagctaaacgggtatccacatgtataataaa 52596810  T
Q  187 tgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattact 286  Q
     | ||| |||||||||||||||||||||||||| || ||| ||||||||                |||| ||||||||||| |||| ||||||||||| |    
T  52596811 cgggtacttgactacccattattatatggatacagagacgtatttgatt----------------gtacccatacccgatattaaaataagtaaattatt 52596894  T
Q  287 aaaatatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttaccgcccaccta 359  Q
    ||||||| ||  |||||||||||||||||||  |||||| ||  ||||||||||||||||||||| |||||||    
T  52596895 aaaatattctcatatatcttatcttattacttaaagttgttactttattgaaggaaattttaccgtccaccta 52596967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 88 - 291
Target Start/End: Original strand, 18902527 - 18902730
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    |||||||||||||||||| ||||||||||| |||| ||||||||||||| ||||||||||  | |||||   |||| ||  ||||||| ||||||||||     
T  18902527 taggggtggcaaaaatactcatgcccacggatacctgtgggtaaaatccatcatgggcacgagacgggtggctaaatggatatccacgcgtataataaac 18902626  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    | |||||||||||||||||| | ||| ||||| |||||| |||| ||  || || | |||||| |||| ||||| |||||||||||||||||||| ||||    
T  18902627 gggtatttgactacccattagtttatagatacagacacgaatttaatgatacccgtgcccacgagtacccatactcgataataaattaagtaaatgacta 18902726  T
Q  288 aaat 291  Q
    ||||    
T  18902727 aaat 18902730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 308
Target Start/End: Complemental strand, 55710615 - 55710511
Alignment:
Q  204 attattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaaatatccttgtatat 303  Q
    ||||||||||||||||||||||||||||||| ||| | ||| ||||| ||||  |||||| |||||||||||| | ||||||||||||||| || |||||    
T  55710615 attattatatggatacggacacggatttgatagtacctatatccacgagtacctatacccaataataaattaaattaattactaaaatatctttatatat 55710516  T
Q  304 cttat 308  Q
    |||||    
T  55710515 cttat 55710511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 173 - 299
Target Start/End: Original strand, 51969975 - 51970101
Alignment:
Q  173 acgagtataataaatgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaa 272  Q
    |||||||||||||| | |||||| |||||| |||||| || ||||| |||||||||||||||  || || |  |||||| ||| ||||||| ||||||||    
T  51969975 acgagtataataaacgggtattttactacctattattttaaggatatggacacggatttgatgatacccgtgtccacggatactcatacccaataataaa 51970074  T
Q  273 ttaagtaaattactaaaatatccttgt 299  Q
    |||| |||||||||| | |||||||||    
T  51970075 ttaaataaattactatattatccttgt 51970101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 293
Target Start/End: Original strand, 45439408 - 45439559
Alignment:
Q  142 gggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggacacggatttgattgtaacc 241  Q
    |||||| |||||| ||  |||||||| ||||  | |||||||||||| |||||| ||||||| || || |||||| |  ||||||||||||||  || |     
T  45439408 gggcacggggcggataattaaacgggtatccgtgggtataataaatgggtatttaactacccgtttttttatggacatagacacggatttgatgatacct 45439507  T
Q  242 atacccacgggtacacatacccgataataaattaagtaaattactaaaatat 293  Q
     | ||||||||||  | || ||| ||||||||||||||||||||||||||||    
T  45439508 gtgcccacgggtatccgtatccgttaataaattaagtaaattactaaaatat 45439559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 181 - 293
Target Start/End: Complemental strand, 49408532 - 49408420
Alignment:
Q  181 aataaatgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaa 280  Q
    |||||||| |||||| ||||||| ||| | ||| || ||| |||| ||||||||  ||  | | ||| |||||| || |||||| |||||||||||||||    
T  49408532 aataaatgggtatttaactacccgttactttatagacacgaacacagatttgatgatattcgtgcccgcgggtatacgtacccgttaataaattaagtaa 49408433  T
Q  281 attactaaaatat 293  Q
    |||||||||||||    
T  49408432 attactaaaatat 49408420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 18906610 - 18906566
Alignment:
Q  191 tatttgactacccattattatatggatacggacacggatttgatt 235  Q
    ||||||||||||| |||||||||||||||  ||||||||||||||    
T  18906610 tatttgactaccccttattatatggatacaaacacggatttgatt 18906566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 49411203 - 49411165
Alignment:
Q  257 catacccgataataaattaagtaaattactaaaatatcc 295  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  49411203 catacccgtaaataaattaagtaaattactaaaatatcc 49411165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 42432764 - 42432793
Alignment:
Q  266 taataaattaagtaaattactaaaatatcc 295  Q
    ||||||||||||||||||||||||||||||    
T  42432764 taataaattaagtaaattactaaaatatcc 42432793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 56543888 - 56543937
Alignment:
Q  186 atgagtatttgactacccatta-ttatatggatacggacacggatttgat 234  Q
    ||||||||||||||||| |||| || |||||||||||||| |||||||||    
T  56543888 atgagtatttgactacctattatttttatggatacggacatggatttgat 56543937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 56543960 - 56544000
Alignment:
Q  253 tacacatacccgataataaattaagtaaattactaaaatat 293  Q
    ||||||||||||||| |||||||||||||||| ||| ||||    
T  56543960 tacacatacccgatattaaattaagtaaattattaatatat 56544000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 88 - 308
Target Start/End: Original strand, 29267784 - 29268003
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||| || ||||||  |||||||| ||||| | ||||||| ||     
T  29267784 taggggtggcaaaaatacccatgcccatgggtacccgcgggtaaaatccatcacgggcac-ggacgggtagctaaacgggtatccatgggtataattaac 29267882  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||| | ||||||||    
T  29267883 gggtatttgactacccattattatatgaatacggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattacta 29267982  T
Q  288 aaatatccttgtatatcttat 308  Q
    |||||||||| ||||||||||    
T  29267983 aaatatccttatatatcttat 29268003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 88 - 348
Target Start/End: Original strand, 16543531 - 16543791
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacaggg-cgggtacgtaaacgggaatccacgagtataataaa 186  Q
    ||||||||| |||||||| ||| |||||||||| | ||||||||||||||||||  |||||||| | ||||  ||||||||  || |||  |||| ||||    
T  16543531 taggggtggtaaaaatactcatacccacgggtatctgtgggtaaaatccgtcatcagcacaggggcaggtagttaaacgggtttc-acggatatagtaaa 16543629  T
Q  187 tgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattact 286  Q
       ||||||||||| |||||||||||| |||||||||||| |||||| |||| |||||| || |||||| ||||||||||||||||||||||||||||||    
T  16543630 caggtatttgactatccattattatatagatacggacacgaatttgactgtatccatacacatgggtactcatacccgataataaattaagtaaattact 16543729  T
Q  287 aaaatatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaatttta 348  Q
    | |||||| || ||||||||||||||||||   |||||| || |||||||||||||||||||    
T  16543730 acaatatcgttatatatcttatcttattacctaaagttgttaccttattgaaggaaatttta 16543791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 88 - 313
Target Start/End: Original strand, 3302905 - 3303130
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    ||||||||||||||| || |||| |||||| ||||||||| |||||||| | | || ||| || | | || ||||| | | ||||||| |||||||||||    
T  3302905 taggggtggcaaaaaaactcatggccacggatacccgtggataaaatccattacggacacgggacagataggtaaatgagtatccacgggtataataaat 3303004  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
    | ||||||||||| ||||||||||||| | |||||||||||||||| |||| ||||||||||| |||| |||||||||| ||||||||| ||||| ||||    
T  3303005 gggtatttgactatccattattatatgaaaacggacacggatttgactgtatccatacccacgagtacccatacccgatgataaattaaataaatgacta 3303104  T
Q  288 aaatatccttgtatatcttatcttat 313  Q
    |||||||||| |||||||||| ||||    
T  3303105 aaatatccttatatatcttattttat 3303130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 190 - 359
Target Start/End: Original strand, 17145093 - 17145262
Alignment:
Q  190 gtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaa 289  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||| ||| ||||| |||||  ||||| ||||| ||| |||||||||||||||||    
T  17145093 gtatttgactacccattattatatggatacgaacacggatttaattgtatccaaacccatgggtagccatactcgatattaatttaagtaaattactaaa 17145192  T
Q  290 atatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttaccgcccaccta 359  Q
    ||||| || ||||||| |||||||||||  |||||| || |||||||||| ||||| ||||||| |||||    
T  17145193 atatctttatatatctaatcttattacttaaagttgttaccttattgaagaaaattataccgccaaccta 17145262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 293
Target Start/End: Complemental strand, 29172066 - 29171863
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    ||||||||| |||||||| ||||||||| | |||||    |||||||||||||||||||  || ||| ||  |||||| | |||||||||| |||||||     
T  29172066 taggggtggtaaaaatactcatgcccacagatacccacaagtaaaatccgtcatgggcatgggacggatagctaaacgagtatccacgagtgtaataaac 29171967  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattacta 287  Q
      |||||||| ||||| |||||||||  ||||  |||| |||||||||||| |||| ||||||||||| |||||||||||| ||||||| ||||||| ||    
T  29171966 atgtatttgattaccctttattatatt-atacatacacagatttgattgtatccattcccacgggtacccatacccgataacaaattaa-taaattatta 29171869  T
Q  288 aaatat 293  Q
    ||||||    
T  29171868 aaatat 29171863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 169 - 294
Target Start/End: Original strand, 12416947 - 12417071
Alignment:
Q  169 atccacgagtataataaatgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataa 268  Q
    |||||||||||| ||||| | |||||||||||| |||||||||||||||||  |||| ||||||||||||  |||  |||||  ||  |||| |||||||    
T  12416947 atccacgagtattataaacgggtatttgactactcattattatatggatacaaacacagatttgattgtactcat-gccacgaatatccatatccgataa 12417045  T
Q  269 taaattaagtaaattactaaaatatc 294  Q
    ||||||||||||||||||||||||||    
T  12417046 taaattaagtaaattactaaaatatc 12417071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 247
Target Start/End: Original strand, 51003851 - 51003999
Alignment:
Q  91 gggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgag 190  Q
    |||||||||||||||||||||||||| || |        |||||||||||  ||||| || ||||||  |||||||| |||||||  ||||||||| |      
T  51003851 gggtggcaaaaatacccatgcccacgtgtgc--------aaaatccgtcacaggcacgggacgggtagctaaacgggtatccacggatataataaacgga 51003942  T
Q  191 tatttgactacccattattatatggatacggacacggatttgattgtaaccataccc 247  Q
    |||||||||| ||||||||||||||||||||||||  |||||||||||  |||||||    
T  51003943 tatttgactatccattattatatggatacggacacaaatttgattgtatacataccc 51003999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 295
Target Start/End: Original strand, 34288230 - 34288435
Alignment:
Q  90 ggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatga 189  Q
    ||||||||||||| | || | ||| |||||| ||  || ||||||| ||||||||||| | |||||||  |||||||| | || || |||||||||| |     
T  34288230 ggggtggcaaaaaaatccgtacccgcgggtatccacggataaaatctgtcatgggcacggagcgggtagctaaacgggtacccgcgggtataataaacgg 34288329  T
Q  190 gtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaattactaaa 289  Q
    ||||||  |||||  ||| | |||||| |||||||| ||||||||  || |  | ||| ||||||  |||||||| |||||| |||||||||||||||||    
T  34288330 gtatttagctacctgttactttatggacacggacacagatttgatgatatctgtgcccgcgggtatccatacccgttaataatttaagtaaattactaaa 34288429  T
Q  290 atatcc 295  Q
    ||||||    
T  34288430 atatcc 34288435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 17586149 - 17586192
Alignment:
Q  258 atacccgataataaattaagtaaattactaaaatatccttgtat 301  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  17586149 atacccgataataaattaaatatattactaaaatatccttgtat 17586192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 23298146 - 23298033
Alignment:
Q  169 atccacgagtataataaatgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataa 268  Q
    ||||||| |||||||||||| |||||| |||| ||||| || ||||||||| |||||  |||||||  ||  | | ||| |  |||  ||||||||||||    
T  23298146 atccacgggtataataaatgggtatttaactatccatttttttatggatacagacacaaatttgatgatactcgtgcccgcatgtatccatacccgataa 23298047  T
Q  269 taaattaagtaaat 282  Q
    ||||||||||||||    
T  23298046 taaattaagtaaat 23298033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 17145002 - 17145061
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcac 147  Q
    ||||| |||||||||||| |||||||||| || ||||||| |||||||| ||| ||||||    
T  17145002 tagggatggcaaaaatacgcatgcccacgagtgcccgtggataaaatccatcacgggcac 17145061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 24536461 - 24536422
Alignment:
Q  249 cgggtacacatacccgataataaattaagtaaattactaa 288  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  24536461 cgggtacccatatccgataataaattaagtaaattactaa 24536422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 3303162 - 3303214
Alignment:
Q  307 atcttattactagaagttgctatcttattgaaggaaattttaccgcccaccta 359  Q
    |||||||||||  |||||| || ||||| ||||||||||||||||| ||||||    
T  3303162 atcttattacttaaagttgttaccttatagaaggaaattttaccgctcaccta 3303214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 163 - 351
Target Start/End: Original strand, 32923010 - 32923198
Alignment:
Q  163 acgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacc 262  Q
    ||||| ||||||| |||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||| || |||    
T  32923010 acgggtatccacgggtataataaacgggtatttgactacccattattatatggatacagacacggatttgattgtgtccatacccacgggtacccacacc 32923109  T
Q  263 cgataataaattaagtaaattactaaaatatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttaccg 351  Q
    | |||||||||||| |||||||||||||||||||| ||||||||||||||||||   |||||| |  ||||||||||||||||||||||    
T  32923110 caataataaattaactaaattactaaaatatccttatatatcttatcttattacctaaagttgttcccttattgaaggaaattttaccg 32923198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 351
Target Start/End: Original strand, 4333635 - 4333734
Alignment:
Q  252 gtacacatacccgataataaattaagtaaattactaaaatatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttaccg 351  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||  |||||| ||  |||||||||  ||||||||||    
T  4333635 gtacccatactcgataataaattaattaaattactaaaatatccttatatatcttatcttattacttaaagttgttactttattgaagataattttaccg 4333734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 28590037 - 28590152
Alignment:
Q  160 taaacgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacat 259  Q
    |||| ||| ||||||| ||||||||||   |||||||||||| ||||||||||||||||| |||||| ||||||| ||| ||||||||||| |||  |||    
T  28590037 taaatgggtatccacgggtataataaacaggtatttgactactcattattatatggatacagacacgaatttgatagtatccatacccacgagtatccat 28590136  T
Q  260 acccgataataaatta 275  Q
    || |||||||||||||    
T  28590137 actcgataataaatta 28590152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 350
Target Start/End: Original strand, 4333839 - 4333937
Alignment:
Q  252 gtacacatacccgataataaattaagtaaattactaaaatatccttgtatatcttatcttattactagaagttgctatcttattgaaggaaattttacc 350  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||  |||||| ||  |||||||||  |||||||||    
T  4333839 gtacccatactcgataataaattaattaaattactaaaatatccttatatatcttatcttattacttaaagttgttactttattgaagttaattttacc 4333937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 284
Target Start/End: Original strand, 9578485 - 9578680
Alignment:
Q  88 taggggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaat 187  Q
    ||||||||| |||||||| |||| ||  ||||||||||||||||||||||||| || ||  || |   ||  |||||||| |||   || |||||||||     
T  9578485 taggggtggaaaaaatactcatggccgtgggtacccgtgggtaaaatccgtcacggacatcggacaaatagataaacgggtatctctga-tataataaac 9578583  T
Q  188 gagtatttgactacccattattatatggatacggacacggatttgattgtaaccatacccacgggtacacatacccgataataaattaagtaaatta 284  Q
    | ||| |||||||||||||||| |||||||| ||||||| |||||||  ||  | | |||| | |||| ||||||||||||||||||||||||||||    
T  9578584 gggtagttgactacccattattttatggatatggacacgaatttgatgatactcgtgcccatgtgtacccatacccgataataaattaagtaaatta 9578680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 4333522 - 4333617
Alignment:
Q  91 gggtggcaaaaatacccatgcccacgggtacccgtgggtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaa 186  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||| ||| |  ||| |||| ||||  |||||||| |||||||  |||||||||    
T  4333522 gggtggcaaaaatacccatgcccatgggtatcggtgggtaaaatccatcacgaacacggggcaggtagctaaacgggtatccacggatataataaa 4333617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 10972984 - 10972941
Alignment:
Q  265 ataataaattaagtaaattactaaaatatccttgtatatcttat 308  Q
    |||||||||||||||||||||||||||||  || ||||||||||    
T  10972984 ataataaattaagtaaattactaaaatattattatatatcttat 10972941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 113671 - 113552
Alignment:
Q  128 gtaaaatccgtcatgggcacagggcgggtacgtaaacgggaatccacgagtataataaatgagtatttgactacccattattatatggatacggacacgg 227  Q
    ||||||||||||| ||||||  || |||||  |||| | | ||||||  ||||| |||| | |||||||||||||  |||||||||| ||| ||| ||      
T  113671 gtaaaatccgtcacgggcacgtggagggtagttaaatgagtatccacatgtatagtaaacgggtatttgactaccagttattatatgtatatggatacat 113572  T
Q  228 atttgattgtaaccataccc 247  Q
    ||||||||||| ||||||||    
T  113571 atttgattgtacccataccc 113552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 113563 - 113522
Alignment:
Q  252 gtacacatacccgataataaattaagtaaattactaaaatat 293  Q
    |||| |||||||||||| ||||||| ||||||||||||||||    
T  113563 gtacccatacccgataacaaattaattaaattactaaaatat 113522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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