View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_low_15 (Length: 370)
Name: NF17033_low_15
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 358
Target Start/End: Complemental strand, 2557971 - 2557631
Alignment:
| Q |
17 |
accaactatcctaagtgcgcatctaggaacccgagtctgggagtgcataatataaaaattgggttaaaggagtgcagatatatatataaaattagagagg |
116 |
Q |
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| T |
2557971 |
accaactattctaagtgcgcatctaggaaccgg-gtcagggagtgcataatataaaaattgggttaaaggagtgcagatatata----aaattagagagg |
2557877 |
T |
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| Q |
117 |
gta----aaatataataattgaagatttttcttataattttctatcaattgttgcacttgcacactctcactatactctaaatctgttcctgatcctaag |
212 |
Q |
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||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2557876 |
gtacgtaaaatataataattgaagatttttcttataattttctgtcaattgttgcactttcacactctcactatactctaaatctgttcctgatcctaag |
2557777 |
T |
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| Q |
213 |
aacttagactgttaggtgaaagacacatggtgacttccataccgtttctctaattcacctcctcgcatgagaacctctcgagctttgaaaaatggacaat |
312 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2557776 |
aacttagactgttaggtgaaagacacatgatgacttccataccgtttctctaattcacctcctcgcatgagaacctctcgagctttaaaaaatggacaat |
2557677 |
T |
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| Q |
313 |
gcacaagctcatctaccttttgtggaaattcaactttttgttagaa |
358 |
Q |
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| T |
2557676 |
acacaagctcatctaccttgtgtggaaattcaactttttgttagaa |
2557631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 207 - 358
Target Start/End: Complemental strand, 2567637 - 2567486
Alignment:
| Q |
207 |
cctaagaacttagactgttaggtgaaagacacatggtgacttccataccgtttctctaattcacctcctcgcatgagaacctctcgagctttgaaaaatg |
306 |
Q |
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||||||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||||| |
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| T |
2567637 |
cctaagaacttcgactgttagctgaaagacacatgataacttccataccgtttctctaatgtttctcttcgcacgagaacctcctgagctttgaaaaatg |
2567538 |
T |
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| Q |
307 |
gacaatgcacaagctcatctaccttttgtggaaattcaactttttgttagaa |
358 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||| |||| |
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| T |
2567537 |
gacaatgcacaagctcatgtaccttgtgtggaaattcaactttttgtcagaa |
2567486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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