View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_low_17 (Length: 359)
Name: NF17033_low_17
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 43380578 - 43380243
Alignment:
| Q |
1 |
tggcccaaaaagaggatctttctcatctatttcccaaatatgatcatactgtttgttgatnnnnnnntgaaaagagaaaatgagtttaacaaactacttt |
100 |
Q |
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| T |
43380578 |
tggcccaacaagaggatctttctcatctatttcccaaatatgatcatactatt----gataaaaaaatgaaaagagaaaatgagtttaacaaact----- |
43380488 |
T |
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| Q |
101 |
tcatttgttggaaactgattctctgtcttaaaagtcatgacacaaattgagccatttatgaatgagttaccttatcatgagataaaagctcaaaggaagg |
200 |
Q |
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| T |
43380487 |
-catgactta-aaactgattctctgtcttaaaactcatgacacaaattgagccatttatgaatgagttaccttatcatgagataaaagctcaaaggaagg |
43380390 |
T |
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| Q |
201 |
accaaagtagcgctctcgaagatcttggatgaccttacactgagaggcatgaaaaggaatattcaatgctgttgcaacaacattagcagtgtgggctgtt |
300 |
Q |
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| T |
43380389 |
accaaagtagcgctctcgaagatcttggatgaccttacaatgagaggcatgaaaaggaatattcaatgctgttgcaacaacattagcagtgtgggttgtt |
43380290 |
T |
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| Q |
301 |
cttgaaaagggggagtagcaaatgcgaacattagcaagtggtatatt |
347 |
Q |
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| T |
43380289 |
cttgaaaagggggagtagcaaatgcgaacattagcaagtggtatatt |
43380243 |
T |
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