View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17033_low_22 (Length: 300)
Name: NF17033_low_22
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 27558542 - 27558269
Alignment:
| Q |
18 |
tggtcattgaaatttgatgagtctatgtagagttgtagcaagaaatatatgtattttccagttcttctgatgtataactagaaataaatgaatgaatttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27558542 |
tggtcattgaaatttgatgagtctatgtagagttgtagcaagaaatatatgtattttccagttcttctgatgtataactagaaataaatgaatgaatatc |
27558443 |
T |
|
| Q |
118 |
acaatcttttctatcagtcactatgactcatttctgtctctctgccttgtaagttggaaggaagtgttgaaaaatttattaaaatatgtgttgctagcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27558442 |
acaatcttttctatcagtcactatgactcatttctgtctctctgccttgtaagttg----gaagtgttgaaaaatttattaaaatgtgtgttgctagcat |
27558347 |
T |
|
| Q |
218 |
ttctctctctagatttctcaccgtattgataatagcaacaactattaattgcatcaggtagttttaatctgtgttgct |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
27558346 |
ttctctctctagatttctcaccgtattgataatagcaacaactattaattgcatcaggtagttttaatttgggttgct |
27558269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 42352395 - 42352540
Alignment:
| Q |
21 |
tcattgaaatttgatgagtctatgtagagttgtagcaagaaatatatgtattttccagttcttctgatgtataactagaaataaatgaatgaatttcaca |
120 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
42352395 |
tcatggaaatttgatgagtttatgtagacctgtagcaagaaatgtttgtattttctagttcttctaatgtataactagaaataaatgaatgagaatcaca |
42352494 |
T |
|
| Q |
121 |
atcttttctatca-----gtcactatgactcatttctgtctctctg |
161 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
42352495 |
atcttttatatcaattttttcactatgacttatttctgtctctctg |
42352540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 50918288 - 50918400
Alignment:
| Q |
18 |
tggtcattgaaatttgatgagtctatgtagagttgtagcaagaaatatatgtattttccagttcttctgatgtataactagaaataaatgaatgaatttc |
117 |
Q |
| |
|
||||||| ||||||||||| | ||||||||| ||||||| ||||| | ||||||||| |||||| ||||||||||||||| ||| |||||||| || |
|
|
| T |
50918288 |
tggtcatggaaatttgatgggcctatgtagacctgtagcaggaaatgtttgtattttctagttcta---atgtataactagaaacaaacgaatgaatatc |
50918384 |
T |
|
| Q |
118 |
acaatcttttctatca |
133 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
50918385 |
acaatcttttctatca |
50918400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 50917696 - 50917771
Alignment:
| Q |
39 |
tctatgtagagttgtagcaagaaatatatgtattttccagttcttctgatgtataactagaaataaatgaatgaat |
114 |
Q |
| |
|
|||||||||| ||||||| ||||| | ||| |||| ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
50917696 |
tctatgtagacctgtagcaggaaatgttggtagtttctagtccttctaatgtataactagaaataaatgaatgaat |
50917771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University