View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_low_23 (Length: 293)
Name: NF17033_low_23
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 23 - 278
Target Start/End: Original strand, 27207818 - 27208073
Alignment:
| Q |
23 |
gaggcacaatcggcggtggcgcagctgaaccttccgttgttgtcggagcatccagttcgaccccaaaatcttcccgaccacggtgatggaaggtccaccg |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
27207818 |
gaggcacaatcggcggtggcgcagctgaaccttccgttgttgtcggagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccg |
27207917 |
T |
|
| Q |
123 |
caattgttgctccaggtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtgtgcacacctatt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27207918 |
caattgttgctccaggtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtatgcacacctatt |
27208017 |
T |
|
| Q |
223 |
tgtgaatgtcaccttagctcctccaaccactgcatacaaatgaaaaatacgttcat |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27208018 |
tgtgaatgtcaccttagctcctccaaccactgcatacaaatgaaaaatacgttcat |
27208073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 278
Target Start/End: Original strand, 27432896 - 27433153
Alignment:
| Q |
21 |
cagaggcacaatcggcggtggcgcagctgaaccttccgttgttgtcggagcatccagttcgaccccaaaatcttcccgaccacggtgatggaaggtccac |
120 |
Q |
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|||||||||||||||||||||| || |||||| |||| ||||||| ||||||||| ||||| |||||||||| |||||||| ||||||||||||||||| |
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| T |
27432896 |
cagaggcacaatcggcggtggcacaactgaactttccattgttgttggagcatccggttcgtccccaaaatcgacccgaccatggtgatggaaggtccac |
27432995 |
T |
|
| Q |
121 |
cgcaattgttgctccaggtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtgtgcacaccta |
220 |
Q |
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| T |
27432996 |
ctcaattgttgctccaggtcctaactcaaaacccgttgttgatagctgaggcttttggtctccagttaacgttcccggccatacagtgtattcacaccta |
27433095 |
T |
|
| Q |
221 |
tttgtgaatgtcaccttagctcctccaaccactgcatacaaatgaaaaatacgttcat |
278 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
27433096 |
tttgtgaatgtcaccttagctcctccaaccgctgcatacaaatgcaaaatacgttcat |
27433153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 258
Target Start/End: Original strand, 27221149 - 27221386
Alignment:
| Q |
21 |
cagaggcacaatcggcggtggcgcagctgaaccttccgttgttgtcggagcatccagttcgaccccaaaatcttcccgaccacggtgatggaaggtccac |
120 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |||| ||||||| | ||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| |
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| T |
27221149 |
cagaggcacaatcggcggtggcacagctgaactttccattgttgttgaagcatccggttcggccccaaaatctacccgaccatggtgatggaaggtccac |
27221248 |
T |
|
| Q |
121 |
cgcaattgttgctccaggtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtgtgcacaccta |
220 |
Q |
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| ||| || |||||| ||| ||||| ||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||| |
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| T |
27221249 |
tgaaatagtaactccagatcccaactcgaaacctgtcgttgatagctgaggtttttggtctccggttaacgttcctggccatacagtgtattcacaccta |
27221348 |
T |
|
| Q |
221 |
tttgtgaatgtcaccttagctcctccaaccactgcata |
258 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
27221349 |
tttgtgaaagtcaccttagctcctccaaccactgcata |
27221386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 21 - 258
Target Start/End: Original strand, 27215187 - 27215424
Alignment:
| Q |
21 |
cagaggcacaatcggcggtggcgcagctgaaccttccgttgttgtcggagcatccagttcgaccccaaaatcttcccgaccacggtgatggaaggtccac |
120 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||| ||||||| | ||||||| ||||| |||||||||| || ||||| ||||||||||||||||| |
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| T |
27215187 |
cagaggcacaatcggcggtggcacagctgaactttccattgttgttgaagcatccggttcggccccaaaatcgaccagaccatggtgatggaaggtccac |
27215286 |
T |
|
| Q |
121 |
cgcaattgttgctccaggtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtgtgcacaccta |
220 |
Q |
| |
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| ||| || |||||| ||| ||||| ||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||| |
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| T |
27215287 |
tgaaatagtaactccagatcccaactcgaaacctgtcgttgatagctgaggtttttggtctccggttaacgttcctggccatacagtgtattcacaccta |
27215386 |
T |
|
| Q |
221 |
tttgtgaatgtcaccttagctcctccaaccactgcata |
258 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
27215387 |
tttgtgaacgtcaccttagctcctccaaccactgcata |
27215424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 258
Target Start/End: Complemental strand, 27443714 - 27443477
Alignment:
| Q |
21 |
cagaggcacaatcggcggtggcgcagctgaaccttccgttgttgtcggagcatccagttcgaccccaaaatcttcccgaccacggtgatggaaggtccac |
120 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||| ||||||| | ||||||| ||||| |||||||||| || ||||| ||||||||||||||||| |
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| T |
27443714 |
cagaggcacaatcggcggtggcacagctgaactttccattgttgttgaagcatccggttcggccccaaaatcgaccagaccatggtgatggaaggtccac |
27443615 |
T |
|
| Q |
121 |
cgcaattgttgctccaggtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtgtgcacaccta |
220 |
Q |
| |
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| ||| || |||||| ||| ||||| ||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||| |
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| T |
27443614 |
tgaaatagtaactccagatcccaactcgaaacctgtcgttgatagctgaggtttttggtctccggttaacgttcctggccatacagtgtattcacaccta |
27443515 |
T |
|
| Q |
221 |
tttgtgaatgtcaccttagctcctccaaccactgcata |
258 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||| |
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| T |
27443514 |
tttgtgaacgtcaccttagctcctccaacaactgcata |
27443477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 128 - 262
Target Start/End: Original strand, 27389217 - 27389351
Alignment:
| Q |
128 |
gttgctccaggtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtgtgcacacctatttgtga |
227 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||| | |||| ||||| |||| |
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| T |
27389217 |
gttgctccaggtcctaactcgaaacctgttgttgatagctgaggtttttggtctccggttaaggttcctggccatacggtgtatccacatctattcgtga |
27389316 |
T |
|
| Q |
228 |
atgtcaccttagctcctccaaccactgcatacaaa |
262 |
Q |
| |
|
|||| ||| | ||||||| | | ||||||||||| |
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| T |
27389317 |
atgttaccgtggctcctctagcagctgcatacaaa |
27389351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 262
Target Start/End: Original strand, 27410183 - 27410307
Alignment:
| Q |
138 |
gtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtgtgcacacctatttgtgaatgtcacctt |
237 |
Q |
| |
|
|||| ||||||||||| ||||| |||| ||||| |||| || ||| || ||||||||||||||||| | | |||| ||||| |||||||||||||| |
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| T |
27410183 |
gtcccaactcaaaacctgttgttgataattgaggggtttgagctgtagtaaaggttcctggccatacagtatatccacatctattcgtgaatgtcacctt |
27410282 |
T |
|
| Q |
238 |
agctcctccaaccactgcatacaaa |
262 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
27410283 |
ggctcctccaaccactgcatacaaa |
27410307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 27415821 - 27415750
Alignment:
| Q |
191 |
gttcctggccatacagtgtgtgcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaaa |
262 |
Q |
| |
|
||||||||||||||||||| | |||| ||||| |||||||||||||| |||||||||||| ||||| ||||| |
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|
| T |
27415821 |
gttcctggccatacagtgtatacacatctattcgtgaatgtcaccttggctcctccaacctctgcagacaaa |
27415750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 271
Target Start/End: Original strand, 27455186 - 27455294
Alignment:
| Q |
162 |
atagctgaggtttttggtctccagttaacgttcctggccatacagtgtgtgcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaa |
261 |
Q |
| |
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|||||||||||||||| |||| |||||||||| || | |||||| | | | ||||| |||| |||||||||||||||||||||||||| |||| || || |
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| T |
27455186 |
atagctgaggtttttg-tctctagttaacgtttctagtcatacaatttattcacacttattggtgaatgtcaccttagctcctccaactactgattagaa |
27455284 |
T |
|
| Q |
262 |
atgaaaaata |
271 |
Q |
| |
|
||| |||||| |
|
|
| T |
27455285 |
atgcaaaata |
27455294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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