View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_low_24 (Length: 289)
Name: NF17033_low_24
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 31877814 - 31877968
Alignment:
| Q |
14 |
ccctttgcttttcacagtatccatcttcaaaaagtgcttaccgtgtgaagaagaaagagccgttgttagaactatatttcttttgagacattatttagaa |
113 |
Q |
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| T |
31877814 |
ccctttgcttttcacagtatccaccttcagaaagggcttaccgagtgatgaagaaagagccttttttaaaactatatttattttgagacagtatttagaa |
31877913 |
T |
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| Q |
114 |
atatacgaaacaacaatttagtaaaattaaatataccatagtatatgtgatgtgg |
168 |
Q |
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| T |
31877914 |
atatatgaaacaacaatttagtaaaattaaatataacatagtatatgtgatgtgg |
31877968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 31939102 - 31939254
Alignment:
| Q |
16 |
ctttgcttttcacagtatccatcttcaaaaagtgcttaccgtgtgaagaagaaagagccgttgttagaactatatttcttttgagacattatttagaaat |
115 |
Q |
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| T |
31939102 |
ctttgcttttcacagtatccaccttctgaaagcgcttaccgagtgaagaagaaagaaccgtttttagaactatatttattttgagacagtattaagaaat |
31939201 |
T |
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| Q |
116 |
atacgaaacaacaatttagtaaaattaaatataccatagtatatgtgatgtgg |
168 |
Q |
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| T |
31939202 |
atatgaaacaacaatttagtaaaattaaatataacttagtatatgtgatgtgg |
31939254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 31695116 - 31694964
Alignment:
| Q |
16 |
ctttgcttttcacagtatccatcttcaaaaagtgcttaccgtgtgaagaagaaagagccgttgttagaactatatttcttttgagacattatttagaaat |
115 |
Q |
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| T |
31695116 |
ctttgcttttcatagtatccaccttctgaaagcgcttaccgagtgaagaagaaagaaccgtttttagaactatatttattttgagacagtattaagaaat |
31695017 |
T |
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| Q |
116 |
atacgaaacaacaatttagtaaaattaaatataccatagtatatgtgatgtgg |
168 |
Q |
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| T |
31695016 |
atatgaaacaacaatttagtaaaattaaatataacttagtatatgtgatgtgg |
31694964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 31877980 - 31878040
Alignment:
| Q |
210 |
atgcatcattataatatatgcctgactagaaagagaaatagtgatctaggactataccataa |
271 |
Q |
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| T |
31877980 |
atgcatcat-atagtatatgcatggctagaaagagaaatagtgatcacggactataccataa |
31878040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 31939274 - 31939321
Alignment:
| Q |
224 |
tatatgcctgactagaaagagaaatagtgatctaggactataccataa |
271 |
Q |
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| T |
31939274 |
tatatgcatggctagaaagagaaatagtgatcacggactataccataa |
31939321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 31975461 - 31975508
Alignment:
| Q |
224 |
tatatgcctgactagaaagagaaatagtgatctaggactataccataa |
271 |
Q |
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| T |
31975461 |
tatatgcatggctagaaagagaaatagtgatcacggactataccataa |
31975508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 31694943 - 31694897
Alignment:
| Q |
225 |
atatgcctgactagaaagagaaatagtgatctaggactataccataa |
271 |
Q |
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|||||| || ||||||||||||||||||||| |||||||||||||| |
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| T |
31694943 |
atatgcatggctagaaagagaaatagtgatcacggactataccataa |
31694897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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