View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_low_25 (Length: 276)
Name: NF17033_low_25
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 121 - 263
Target Start/End: Complemental strand, 8692535 - 8692390
Alignment:
| Q |
121 |
tttaataatagctggtcgggtaattaagcacccattatt---ttgattatgaattaagcaggcattattgatgtaagtagatttaatagagatataatta |
217 |
Q |
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| T |
8692535 |
tttaataatagctggtcggttaattaagcacccattattattttgattatgaattaagcaggcattattgatgtaagtagatttaatagagatataatta |
8692436 |
T |
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| Q |
218 |
gattcatagaaaagattgatgagatgccaagaaagtattaggagta |
263 |
Q |
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| T |
8692435 |
gattcatagaaaagattgatgagatgccaagaaagtattaggagta |
8692390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 8696568 - 8696667
Alignment:
| Q |
17 |
gttacttatatagagttcccacatgcaaattttttgggtcaaacccccacatacaatttatgcttagctattttgtttcttttctttgctgtaattgtcc |
116 |
Q |
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| T |
8696568 |
gttacttatatagagttcccacatgcaaattttttgggtcaaatccccacatacaatttatgcttagctattttgtttcttttctttgctgtaattgtcc |
8696667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 8692674 - 8692575
Alignment:
| Q |
23 |
tatatagagttcccacatgcaaattttttgggtcaaacccccacatacaatttatgcttagctattttgtttcttttctttgctgtaattgtcccatgtt |
122 |
Q |
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| T |
8692674 |
tatagagagttcccacatgcaagttttttgggtcaaacccccacatacaatttatgcttaactattttgtttcttttctttgctgtaattgtcccatgtt |
8692575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 8678446 - 8678359
Alignment:
| Q |
32 |
ttcccacatgcaa-attttttgggtcaaacccccacatacaatttatgcttagctattttgtttcttttctttgctgtaattgtcccatgtt |
122 |
Q |
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| T |
8678446 |
ttcccacatgcaatatttttttggtcaaatccccacatgcaatt-atgcttagctattttgtttctt---tttgctgtaattatcccatgtt |
8678359 |
T |
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