View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_low_26 (Length: 265)
Name: NF17033_low_26
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 46197110 - 46196871
Alignment:
| Q |
12 |
atgaaaaagatagatataataagatagttggtaaga-----------taaaatatgagctt-caaaagatcatattctacatatataatacgtgatgtgc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
46197110 |
atgaaaaagatagatataataagatagttggtaagagtaggataaaattaaatatgagctttcaaaagatcatattctacata----atacgtgatgtgc |
46197015 |
T |
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| Q |
100 |
acttgataactcactaggttttattacacaggagttttgcatgtatgttttgggaaagtgaagtgatgttctttaaacatggaacaaattagaccaagtt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46197014 |
acttgataactcactaggttttattacacaggagttttgcatgtatgttttgggaaagtgaagtgatgttctttaaacatggaacaaattagaccaagta |
46196915 |
T |
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| Q |
200 |
agcacaatgatggagtgttgtgttggattcgagctgctcagcttaattt |
248 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
46196914 |
agcaaaatgatggagt-----gttggattcgagctgctcagcttaattt |
46196871 |
T |
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