View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_low_35 (Length: 227)
Name: NF17033_low_35
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 183031 - 183248
Alignment:
| Q |
1 |
cagtctctaacaataaataaaacacaaattaatctatgacattttcatattcgggataaattagtccataaatcattgtattatagagactaatttggat |
100 |
Q |
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| T |
183031 |
cagtctctaacaataaataaaacacaaattaatctatgacattttcatattcgggataaattagtccataaatcattgtattatagagactaatttggat |
183130 |
T |
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| Q |
101 |
ttatgttttgtcaagtagtacttaattctctaagaaaattatgagggttgtgtattaatggtgaagactatagagtagttgggtatggttgacaacactt |
200 |
Q |
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| T |
183131 |
ttatgttttgtcaagtagtacttaattctctaagaaaattatgagggttgtgtattaatggtgaagactatagagtagttgggtatggttgacaacactt |
183230 |
T |
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| Q |
201 |
attctctcattgatgatg |
218 |
Q |
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| T |
183231 |
attctctcattgatgatg |
183248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 15962650 - 15962607
Alignment:
| Q |
54 |
ggataaattagtccataaatcattgtattatagagactaatttg |
97 |
Q |
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| T |
15962650 |
ggataaattagtccttaactcattgtattagagagactaatttg |
15962607 |
T |
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