View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_low_36 (Length: 227)
Name: NF17033_low_36
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_low_36 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 31767262 - 31767042
Alignment:
| Q |
7 |
taatataaagttgtgccaatttttatatgctctataaattattcaaatattttaattgttgagaataataattctaggttcaaaacagaaccatgaattg |
106 |
Q |
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| T |
31767262 |
taatataaagttgtgccaatttttttatgctctataaattattcaaatattttgattgttgagaataataattctaggttcaaaacagaaccatgaattg |
31767163 |
T |
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| Q |
107 |
ttaaggagtctgttaaacgtgattttcaatttattgttttcattgtaagtcttaaattttatgtgactaannnnnnnagaaaggtggtatttataattta |
206 |
Q |
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| T |
31767162 |
ttaaggagtctgttaaacgtgattttcaatttattgttttcattgtaagtcttaaattttatgtgactaatttttttagaaaggtgatatttataattta |
31767063 |
T |
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| Q |
207 |
taaaagtattgatttttgtaa |
227 |
Q |
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| T |
31767062 |
taaaagtattgatttttgtaa |
31767042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 31750182 - 31750403
Alignment:
| Q |
11 |
ataaagttgtgccaatttttatatgctctataaattattcaaatattttaattgttgagaataataattctaggttcaaaacagaaccatgaattgttaa |
110 |
Q |
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| T |
31750182 |
ataaagttgtggcaatttttaaattctctataaattattcaattattttgattgttgagaataagaattctaggttcaaaacagaaccatgaattgttaa |
31750281 |
T |
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| Q |
111 |
ggagtctgttaaacgtgattttcaatttattgttttcattgta--agtcttaaatttta----tgtgactaannnnnnnagaaaggtggtatttataatt |
204 |
Q |
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| T |
31750282 |
ggagtctgttaaacgtgatatttaatttattgttttcatttcaagagtcttaaattttatctgtgtgactaa-ttttttagaaaggtgatatttataatt |
31750380 |
T |
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| Q |
205 |
tataaaagtattgatttttgtaa |
227 |
Q |
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| T |
31750381 |
tataaaagtattgatttgtgtaa |
31750403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 31760518 - 31760416
Alignment:
| Q |
26 |
tttttatatgctctataaattattcaaatattttaattgttgagaataataattctaggttcaaaacagaaccatgaattgttaaggagtctgttaaacg |
125 |
Q |
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| T |
31760518 |
tttttatattttctataaattatcaaaatatgttgattgttgagaataagaattctaggttcaaaacagaatcttgaattgtcaaggagtctgttaaatg |
31760419 |
T |
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| Q |
126 |
tga |
128 |
Q |
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||| |
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| T |
31760418 |
tga |
31760416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 31752927 - 31752818
Alignment:
| Q |
7 |
taatataaagttgtgccaat-ttttatatgctctataaattattcaaatattttaattgttgagaataataattctaggttcaaaacagaaccatgaatt |
105 |
Q |
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||||||||||||||| ||| |||||||| || |||| |||| |||||| || | |||||||||||| ||| |||| |||||||||| ||| ||||| |
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| T |
31752927 |
taatataaagttgtggtaatgttttatattttcgataacttatcaaaatatgttgaatgttgagaataagaatactagattcaaaacaggaccttgaata |
31752828 |
T |
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| Q |
106 |
gttaaggagt |
115 |
Q |
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|| ||||||| |
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| T |
31752827 |
gtcaaggagt |
31752818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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