View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17033_low_4 (Length: 503)

Name: NF17033_low_4
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17033_low_4
NF17033_low_4
[»] chr7 (3 HSPs)
chr7 (8-484)||(49041274-49041750)
chr7 (390-464)||(31333842-31333916)
chr7 (69-227)||(49039743-49039901)
[»] chr1 (3 HSPs)
chr1 (402-479)||(15239448-15239525)
chr1 (402-455)||(34053147-34053200)
chr1 (386-482)||(50087288-50087384)
[»] chr2 (1 HSPs)
chr2 (390-464)||(23499272-23499346)
[»] chr5 (1 HSPs)
chr5 (385-481)||(23271550-23271646)
[»] chr4 (2 HSPs)
chr4 (390-464)||(26453318-26453392)
chr4 (387-455)||(46572635-46572703)


Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 8 - 484
Target Start/End: Complemental strand, 49041750 - 49041274
Alignment:
Q  8 gagcacagagaatttaaccctcaattggtactttggaaatgatcgttcaatgcttctttctaattgcattttccgaatgggtggcgccgccatacttctt 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49041750 gagcaccgagaatttaaccctcaattggtactttggaaatgatcgttcaatgcttctttctaattgcattttccgaatgggtggcgccgccatacttctt 49041651  T
Q  108 tccaataagtcctctgatcgaacccgttccaaatacaagcttgttcatacagttcgaacccataaaggagctgatgacaagaactataactgtgtttacc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49041650 tccaataagtcctctgatcgaacccgttccaaatacaagcttgttcatacagttcgaacccataaaggagctgatgacaagaactataactgtgtttacc 49041551  T
Q  208 agaaagaagatgagacagggaaagttggtgtttcattggctagagaattaatggctgttgcaggagatgctttgaaaacaaacataacaacgttgggtcc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49041550 agaaagaagatgagacagggaaagttggtgtttcattggctagagaattaatggctgttgcaggagatgctttgaaaacaaacataacaacgttgggtcc 49041451  T
Q  308 attggttttgccattttctgaacagttgatgttttttgtttctttggttagaaggaagttgctgaaaggttcaggtgtgaaaccttatataccagatttc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49041450 attggttttgccattttctgaacagttgatgttttttgtttctttggttagaaggaagttgctgaaaggttcaggtgtgaaaccttatataccagatttc 49041351  T
Q  408 aaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaact 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49041350 aaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaact 49041274  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 390 - 464
Target Start/End: Original strand, 31333842 - 31333916
Alignment:
Q  390 ccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgag 464  Q
    |||||||| || ||||||||  ||||||| ||||||||||| |||||||| ||||||||||||||| | ||||||    
T  31333842 ccttatattcctgatttcaagctagctttcgaacatttctgcattcatgccggtggaagagctgttttagatgag 31333916  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 227
Target Start/End: Original strand, 49039743 - 49039901
Alignment:
Q  69 aattgcattttccgaatgggtggcgccgccatacttctttccaataagtcctctgatcgaacccgttccaaatacaagcttgttcatacagttcgaaccc 168  Q
    ||||| |||||||||||||| || || ||| ||||||| |||||||| |||| |||| | ||||  ||||| |||||| |  ||||||  |||||||| |    
T  49039743 aattgtattttccgaatgggaggagctgccgtacttctctccaataaatcctttgataggacccaatccaagtacaagttacttcatagcgttcgaactc 49039842  T
Q  169 ataaaggagctgatgacaagaactataactgtgtttaccagaaagaagatgagacaggg 227  Q
    ||  ||||||  ||||||||| ||| || ||||| | ||| ||||| || || ||||||    
T  49039843 attcaggagccaatgacaagagctacaattgtgtgttccaaaaagaggacgaaacaggg 49039901  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 402 - 479
Target Start/End: Original strand, 15239448 - 15239525
Alignment:
Q  402 gatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatctt 479  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||||||| |||| ||||||    
T  15239448 gattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgagttggagaaaaatctt 15239525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 34053147 - 34053200
Alignment:
Q  402 gatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgtt 455  Q
    ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||    
T  34053147 gattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgtt 34053200  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 482
Target Start/End: Complemental strand, 50087384 - 50087288
Alignment:
Q  386 gaaaccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaa 482  Q
    |||||| |||||||| ||||| |||  ||||||||||||||| ||||| |||||||||||  | |||||  |||||||||| || ||||||||||||    
T  50087384 gaaaccatatatacctgattttaaacaagcttttgaacatttttgtatacatgctggtggtcgtgctgtgattgatgagttacaaaagaatcttcaa 50087288  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 390 - 464
Target Start/End: Complemental strand, 23499346 - 23499272
Alignment:
Q  390 ccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgag 464  Q
    |||||||| |||||||||||  ||||||| ||||||||||| |||||||| ||||||||||||||| | ||||||    
T  23499346 ccttatattccagatttcaagctagctttcgaacatttctgcattcatgccggtggaagagctgttttagatgag 23499272  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 481
Target Start/End: Complemental strand, 23271646 - 23271550
Alignment:
Q  385 tgaaaccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttca 481  Q
    |||| |||||||| || |||||||||  ||| ||||| ||||| |||||||||||||||||| | || ||  | |||||||| ||||||||||||||    
T  23271646 tgaagccttatattcctgatttcaaacaagcgtttgagcatttttgtattcatgctggtggacgtgccgtgatcgatgagttacagaagaatcttca 23271550  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 464
Target Start/End: Original strand, 26453318 - 26453392
Alignment:
Q  390 ccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgag 464  Q
    ||||||||||| ||||| ||  | |||||||| ||||| ||||||||||||||||| ||||||||  ||||||||    
T  26453318 ccttatatacctgattttaagcttgcttttgagcatttttgtattcatgctggtggtagagctgtgattgatgag 26453392  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 455
Target Start/End: Original strand, 46572635 - 46572703
Alignment:
Q  387 aaaccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgtt 455  Q
    ||||||||||| || ||||||||  |||||||||||||||| || || ||||| || || |||||||||    
T  46572635 aaaccttatattcctgatttcaagctagcttttgaacatttttgcatccatgccggaggtagagctgtt 46572703  T

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