View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_low_5 (Length: 493)
Name: NF17033_low_5
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 11 - 485
Target Start/End: Original strand, 31698825 - 31699299
Alignment:
| Q |
11 |
agaagaagtgtgaaataggattggatatggaaaccaatactcatttaacataacatacttaaatgcccagatgcaaccatcttgcaagacatttgcaccc |
110 |
Q |
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| T |
31698825 |
agaagaagtgtgaaataggattggatatggaaaccaatactcatttaacataacatccttaaatgcccagatgcaaccatcttgcaagacatttgcaccc |
31698924 |
T |
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| Q |
111 |
tttgtgattgtgtgataaaccaaaaaatacactccttggatctgaaatccattttaggctgattgtaaggcatcagaaatgaaaagcaagcatgtccgat |
210 |
Q |
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| T |
31698925 |
tttgtgattgtgtgataaacccaaaaatacactccttggatctgaaatccattttaggctgattgtaaggcatcagaaatgaaaagcaagcatgtccgat |
31699024 |
T |
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| Q |
211 |
gttcttaaatccttgttatgaggtatggtaggaacttattaagtgtggcatggggaatataattagattgcagatgaacggagtctgttgataggtatac |
310 |
Q |
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| T |
31699025 |
gttcttaaatccttgttatgaggtagggtaggaacttattaagtgtggcatggggaatataattagattgctgatgaacggagtctgttgataggtatac |
31699124 |
T |
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| Q |
311 |
agcaatgtaaaaactgaaatcccattaggaaagcggtatggaggagggatgggcaagtagagttagacccttttatactatttgtcgatttatattcaac |
410 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
31699125 |
agcaatgcaaaaactgaaatcccattaggaaagcggtatggaggagggatgggcaagtagagttagacccttttatactatttgtcaatttattttcaac |
31699224 |
T |
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| Q |
411 |
caaaccattttggttagatgtgctagtcaatctatggatgatgccaaatttattgagaaattgtgcacaggttct |
485 |
Q |
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| T |
31699225 |
caaaccattttggttagatgtgctagtcaatctatggatgatgccaaatttattgagaaattgtgcacaggttct |
31699299 |
T |
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