View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_low_6 (Length: 486)
Name: NF17033_low_6
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 43083228 - 43082904
Alignment:
| Q |
18 |
ctaaagatattattagcagtttcctttgtataaaacgttctgagtgtgtttggtgaagtagttttgattaaggcgcaagtggcttcttcgatagtcatag |
117 |
Q |
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| T |
43083228 |
ctaaagatattattagcagtttcctttgtataaaacgttctgagtgtgtttggtgaagtagttttgattaaggcgcaagtggcttcttggatagtcatag |
43083129 |
T |
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| Q |
118 |
tacaaaatgttggtatgtttcatggtttggtaagtctggaaaatgttgaaaaagtgttgcagagagtacgtagaaactcttttttgaatccgtacaaaat |
217 |
Q |
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| T |
43083128 |
tacgaactgttggtatgtttcatggtttggtaagtctggaaaatgttgaaaaagtgttgcagagagtacgtagaaactcttttttgaatccgtacaaaat |
43083029 |
T |
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| Q |
218 |
gaaaataggagaataatgaaatgtacttggttagaagtgcttatcgttgttgtgttggtgaaatgcaaaaattcctccnnnnnnnnnnnntctactttag |
317 |
Q |
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| T |
43083028 |
gaaaataggagaataatgaaatgtacttggttagaagtgcttatcgttgttgtgttggtgaaatgcaaaaattcctccaaaaataaaaaatctactttag |
43082929 |
T |
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| Q |
318 |
catgcatgttcgtagaaattgccta |
342 |
Q |
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|||| |||||||||||||||||||| |
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| T |
43082928 |
catgtatgttcgtagaaattgccta |
43082904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 368 - 464
Target Start/End: Complemental strand, 43082901 - 43082805
Alignment:
| Q |
368 |
gaggggtaaattgtccatataattgtgtgctatgtgattccgatattaaagataacatgcatatccttttggcaaatgattgaaattggaactatat |
464 |
Q |
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| T |
43082901 |
gaggggtaaattgtccatataattgtgtgctatgtgattccgatattaaagataacatgcatatccttttggcaaatgattgaaaatggaactatat |
43082805 |
T |
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