View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_low_8 (Length: 462)
Name: NF17033_low_8
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 12 - 444
Target Start/End: Complemental strand, 182676 - 182249
Alignment:
| Q |
12 |
cagagaatgaaacaagtataccaagatgtccaaccatcataagagaaaccacttgaagaagatattgtgaaacagttacagctaccattggagctgccac |
111 |
Q |
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| T |
182676 |
cagagaatgaaacaagtataccaagatgtccaaccatcataagagaaaccacttgaagaagatattgtgaaacagttacagctaccattggagctgcaac |
182577 |
T |
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| Q |
112 |
gaaactcactttcttcaactcttgaacaaatgtactctcaatctcatcat---tctttcttatcaatggtgttgtcacctccttactcatctctctagag |
208 |
Q |
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| T |
182576 |
gaaactcactttcttcaactcttgaacaaatgtactctcaatctcatgatcactctttcttatcaatggtgttgtcacctccttactcatctctctagag |
182477 |
T |
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| Q |
209 |
ttgtttttcattaaatgtgatcactatgaatatgatatcagagatttatatataggagtgaaagagttttttctttcttcttctacctatatggaaagta |
308 |
Q |
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| T |
182476 |
ttgtttttcattaaatgtgatcactatgaatatgatatcagagatttatatataggagtgaaagagttgtttctttcttcttctacctatatggaaagta |
182377 |
T |
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| Q |
309 |
agtgtggttaatgttaatatttatggtcaaaaaccaagttgcatattatattaataataataaatttaaaattgtgcttctgcacacagaatgagaatga |
408 |
Q |
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| T |
182376 |
agtgtggttaatgttaatatttatggtcaaaaaccaagttgcatat--------taataataaatttaaaattgtgcttctgcacacagaatgaggatga |
182285 |
T |
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| Q |
409 |
cagaattgaagagtgtgttgtttgttagttagttgt |
444 |
Q |
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| T |
182284 |
cagaattgaagagtgtgttgtttgttagttagttgt |
182249 |
T |
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