View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17033_low_9 (Length: 434)
Name: NF17033_low_9
Description: NF17033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17033_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 415
Target Start/End: Complemental strand, 384847 - 384446
Alignment:
| Q |
14 |
ttctcctcttcagccttgcaaatgtcctctttgtcgtcatcctattaatcttcttcttcccactgacgttgtcgacaacaacaattatgagcaggatcgt |
113 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
384847 |
ttctcctcttcaaccttgcaaatgtcctctttgtcgtcgtcctattaatcttcttcttcccactgacgttgtcgacaacaacaattatgagcaggatagt |
384748 |
T |
|
| Q |
114 |
cttctgggtgatattcagaaatataatcgtctttttggtgaacaatctaatgctagtattgctgagagattacgtgatcttccgtttcttttaagaaggc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
384747 |
cttctgggtgatattcagaaatataatcgtctttttggtgaacaatctaatgctagtattgctgagagattacgtgatcttccgtttcttttaagaaggc |
384648 |
T |
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| Q |
214 |
tttttagggattttgctaaccctaatgtgtcttttcctcttgttatcagagctcgtatttttgttacggttagttcttcataactcctcaattannnnnn |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
384647 |
tttttagggattttgctaaccctaatgtgtcttttcctcttgttatcagagctcgtatttttgttacagttagttcttcataactcctcaactatttttt |
384548 |
T |
|
| Q |
314 |
nactttgttgttgttgttgatgtttatattcaaattatcattaggtagttgtgaatcgtgtcgggttggagatcattagtcagaatgttggaggtgactt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
384547 |
tactttgttgttgttgttgatgtttatattcaaattatcattaggtagttgtgaatcgtgtcggattggagatcattagtcggaatgttggaggtgactt |
384448 |
T |
|
| Q |
414 |
cg |
415 |
Q |
| |
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|| |
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| T |
384447 |
cg |
384446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 390227 - 389947
Alignment:
| Q |
14 |
ttctcctcttcagccttgcaaatgtcctctttgtcgtcatcctattaatcttcttcttcccactgacgttgtcgacaacaacaattatgagcaggatcgt |
113 |
Q |
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|||||||||||| ||||||||||||||||| ||||||| ||||||||| |||||| ||||||| ||||| || ||| || ||||| |||||| |||||| |
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| T |
390227 |
ttctcctcttcaaccttgcaaatgtcctctctgtcgtcgtcctattaaccttcttgttcccaccgacgtcgtagacgacgccaattctgagcaagatcgt |
390128 |
T |
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| Q |
114 |
ct---tctgggtgatattcagaaatataatcgtctttttggtgaacaatctaatgctagtattgctgagagattacgtgatcttccgtttcttttaagaa |
210 |
Q |
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| | ||| ||||||||| | |||||| ||| ||||||| ||||||||||||||||||||| | ||||||||||||||||||| |||||||| | || |
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| T |
390127 |
ttgaatttggctgatattcaaagatataaccgtgtttttggccaacaatctaatgctagtattgttcagagattacgtgatcttccttttcttttgaaaa |
390028 |
T |
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| Q |
211 |
ggctttttagggattttgctaaccctaatgtgtcttttcctcttgttatcagagctcgtatttttgttacggttagttctt |
291 |
Q |
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| T |
390027 |
ggctttttaaggattttgttaaccctaatacttctcttcctcttgttattagagctcgtgttttcattacggttagttctt |
389947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 367
Target Start/End: Complemental strand, 389908 - 389857
Alignment:
| Q |
318 |
ttgttgttgttgttgatgtttatattcaaatt--atcattaggtagttgtga |
367 |
Q |
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||||||||||||||| ||||||| |||||||| ||||||||||||| |||| |
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| T |
389908 |
ttgttgttgttgttgttgtttatgttcaaattaaatcattaggtagtcgtga |
389857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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