View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_high_11 (Length: 531)
Name: NF17034_high_11
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 61 - 329
Target Start/End: Original strand, 37606340 - 37606606
Alignment:
| Q |
61 |
tagctagtttaatgaactaagatactaggagaaaaataatatcttagtttccaatgcctagttggttgtcccccaaagaaaatatttgtagtatcaattt |
160 |
Q |
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| T |
37606340 |
tagctagtttaatgaactaagatactaggagaaaaataatatcttagtttccaatggctagttggttgtcccccaaagaaaatatttgtagtatcaattt |
37606439 |
T |
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| Q |
161 |
atacaaatgcaatggagattggtagcaagaaatcatatatatatctttggagaaggatctatatgtgggtatacaagagagtttatttttactgttcaca |
260 |
Q |
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| T |
37606440 |
atacaaatgcaatggagattggtagcaagaaatc----atatatctttggagaaggatctatatgtgggtatgcaagagagtttatttttactgttcaca |
37606535 |
T |
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| Q |
261 |
ctgagcaactgaaataagaaaggaattaatggattcg--acacacattcactttgtgcatgcaagcaaaag |
329 |
Q |
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| T |
37606536 |
ctgagcaactgaaataagaaaggaattaatggattcgacacacacattcactttgtgcatgcaagcaaaag |
37606606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 330 - 430
Target Start/End: Original strand, 37606636 - 37606737
Alignment:
| Q |
330 |
aggctgtttccgaacctatttt-aatacaagaaatttagtcacaaaatttagaaggaggaagaagctaataatgtatgaaaaatcaggataatgaaatac |
428 |
Q |
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| T |
37606636 |
aggctgtttccgaacctatttttaatacaagaaatttagtcacaaactttagaaggaggaagaagctaataatgtatgaaaaatcaggataatgaaatac |
37606735 |
T |
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| Q |
429 |
tt |
430 |
Q |
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|| |
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| T |
37606736 |
tt |
37606737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 37600103 - 37600204
Alignment:
| Q |
136 |
aagaaaatatttgtagtatcaatttatacaaatgcaatggagattggtagcaagaaatcatatatatatctttggagaaggatctatatgtgggtataca |
235 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||||||| ||||||||||||| |||||||| |||||| ||||||| |
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| T |
37600103 |
aagaaaatatttgtagtgtcaatttatacaaatgaaatggtgattcgtagcaagaaatc----atatatctttggaaaaggatctttatgtgagtataca |
37600198 |
T |
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| Q |
236 |
agagag |
241 |
Q |
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|||||| |
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| T |
37600199 |
agagag |
37600204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 37605874 - 37605935
Alignment:
| Q |
1 |
tttataaattggcgctacttcatcctctcacccatccaggtccaacatcgcaaatctatcta |
62 |
Q |
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| T |
37605874 |
tttataaattggcgctacttcatcatctcacccatccaggtccaacatcgcaaatctatcta |
37605935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 37606274 - 37606213
Alignment:
| Q |
1 |
tttataaattggcgctacttcatcctctcacccatccaggtccaacatcgcaaatctatcta |
62 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37606274 |
tttataaattggcactagttcatcctctcacccatccaggtccaacatcacaaatctatcta |
37606213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 34750989 - 34751037
Alignment:
| Q |
152 |
tatcaatttatacaaatgcaatggagattggtagcaagaaatcatatat |
200 |
Q |
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| T |
34750989 |
tatcaatttatacaaatgctatggagattggtagcaagaaatcatatat |
34751037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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