View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_high_15 (Length: 488)
Name: NF17034_high_15
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 471
Target Start/End: Complemental strand, 44471780 - 44471321
Alignment:
| Q |
12 |
agagatactagaatttgttatattaaaatattatagttctatgcaattaactaaaattagtctctatatatatgtagtgtaatagactaagnnnnnnnnn |
111 |
Q |
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| T |
44471780 |
agagatactagaatttgttatattaaaatattatagttctatgcaattaactaaaattagtctctatat----gtagtgtaagagactaagttttttttt |
44471685 |
T |
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| Q |
112 |
nngtggacagtgtaagagactaatgtaaatctcatnnnnnnntgtaacttgattattca---tcttttttaaagagatttgtttatttcttagtttttct |
208 |
Q |
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| T |
44471684 |
ttgtggacagtgtaagagactaatgtaaatctcataaaaaaatgtaacttgatcattcaatatattttttaaagaaatttgtttatttcttagtttttct |
44471585 |
T |
|
| Q |
209 |
tccgtattaaaacagttattagctggtaaaaacaaacagtaattagaa-gcaaccttatttgagcctacctagctagccctaatacgtattacgctgctt |
307 |
Q |
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| T |
44471584 |
tccgtattaaaacagttattagctggtaaaaacaaacagtaattagaaaggaaccttattcgagcctacctagctagccctaatacgtattacactgctt |
44471485 |
T |
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| Q |
308 |
ctatatgcttcttgacatttgatctttgacgaaatataataagcatattaattgattccagtaattaatagtgttcgcaataattgacgccaaagggaac |
407 |
Q |
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| T |
44471484 |
ctatatgcttcttgacatttgatctttgacgaaatataataagcatattaattaattctagtaattaatagtgttcgcaataattgacgccaaagggacc |
44471385 |
T |
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| Q |
408 |
acctgaaggaaggaaagagtcgaagttgaaggtgatgggagggtagtcacggtggtatacgatg |
471 |
Q |
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| T |
44471384 |
acctgaaggaaggaaagagtcgaagttgaaggtgataggagggtagtcacggtggtatacgatg |
44471321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 222 - 322
Target Start/End: Complemental strand, 44476199 - 44476099
Alignment:
| Q |
222 |
agttattagctggtaaaaacaaacagtaattagaagcaaccttatttgagcctacctagctagccctaatacgtattacgctgcttctatatgcttcttg |
321 |
Q |
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|||||||||||||||||||||||||| ||||| |||| | |||||||||||| ||||||||||||||||||||||||| || | |||||||||||| ||| |
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| T |
44476199 |
agttattagctggtaaaaacaaacagcaattaaaagctatcttatttgagccaacctagctagccctaatacgtattatgcggtttctatatgcttattg |
44476100 |
T |
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| Q |
322 |
a |
322 |
Q |
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| T |
44476099 |
a |
44476099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 44476363 - 44476305
Alignment:
| Q |
15 |
gatactagaatttgttatattaaaa-tattatagttctatgcaattaactaaaattagt |
72 |
Q |
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||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
44476363 |
gatactaaaatttgttatattaaaaatattctagttctatgcaattaactaaaattagt |
44476305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 44485908 - 44485860
Alignment:
| Q |
307 |
tctatatgcttcttgac-atttgatctttgacgaaatataataagcata |
354 |
Q |
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| T |
44485908 |
tctatatgcttctggacgatttgatctttgacaaaatataatatgcata |
44485860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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