View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_high_23 (Length: 412)
Name: NF17034_high_23
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 34872519 - 34872817
Alignment:
| Q |
8 |
tgagaagaagagtccagtcctgccccagcaatcatggtgttgacgttgtggatgtctatcctcctaccgccgcctcggctggccaacttcctgctagatt |
107 |
Q |
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| T |
34872519 |
tgagaagaagagtccagtcctgccccagcaatcatggtgttgacgtggtggatgtctatcctcctaccgccgcctcggctggccaacttcctgctagatt |
34872618 |
T |
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| Q |
108 |
tcttaacaagcttatgaatgtgctgcatttttcctacgaacataaagtacataaaacatgtcaataattaagcttaaaagaaaacaattatagggtgcaa |
207 |
Q |
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| T |
34872619 |
gcttaacaagcttatgaatgtgctgcatttttcctacgaacataaagtacggaaaacatgttagtaactaagcttaaaagaaaacaattatagggtgcaa |
34872718 |
T |
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| Q |
208 |
acgggtcctttatttaattattttaatgtacacaactcatatttttgtacataaaatttaaaattattttgatactatatttgaatttgtcacaaaaaa |
306 |
Q |
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| T |
34872719 |
acgggtcctttatttaattcttttaatgtacacaactcatattgttgtacataaaatttaaaattattttgatactatatttgaatttgtcacaaaaaa |
34872817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 300 - 398
Target Start/End: Original strand, 34872855 - 34872953
Alignment:
| Q |
300 |
caaaaaagctaggaagtagggtgacgctttgcggcccacaagaacttcaattagcacttttatgcttatgtctttcatagatcattgatagaaaaaatt |
398 |
Q |
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| T |
34872855 |
caaataagctagcaagtagggtgacgctttgcggcccacaagaacttcaattagcacttttatgcttatgtctttcatagattattgatagaaaaaatt |
34872953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 187 - 293
Target Start/End: Complemental strand, 27951345 - 27951239
Alignment:
| Q |
187 |
gaaaacaattatagggtgcaaacgggtcctttatttaattattttaatgtacacaactcatatttttgtacataaaatttaaaattattttgatactata |
286 |
Q |
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| T |
27951345 |
gaaaacaatcatagggtacaaataggtcctttatttaattcttttaatctacgcaactcatattgttttacataaaatttaaaattattttgatactata |
27951246 |
T |
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| Q |
287 |
tttgaat |
293 |
Q |
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| T |
27951245 |
tttgaat |
27951239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 361
Target Start/End: Complemental strand, 27948282 - 27948235
Alignment:
| Q |
314 |
agtagggtgacgctttgcggcccacaagaacttcaattagcactttta |
361 |
Q |
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| T |
27948282 |
agtagggtgacgctttgcggcccacaagagctttaattagcactttta |
27948235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 396
Target Start/End: Complemental strand, 27948219 - 27948186
Alignment:
| Q |
363 |
gcttatgtctttcatagatcattgatagaaaaaa |
396 |
Q |
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| T |
27948219 |
gcttatgtctttcatagattattgatagaaaaaa |
27948186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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