View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17034_high_25 (Length: 398)
Name: NF17034_high_25
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_high_25 |
 | |
|
| [»] scaffold0022 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0022 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 44026 - 43638
Alignment:
| Q |
1 |
cttcaccattttgtatttcatcttgctcttactgttcacctccacctctttttctcttgattgcagctcttcattcttcgttttagagatataaaatgca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44026 |
cttcaccattttgtattccatcttgctcttactgttcacctccacctctctttctcttgtttgcagctcttcattcttcgttttagaaatataaaatgca |
43927 |
T |
|
| Q |
101 |
ttatgttcactttcaagaatatatgtgttatcttaaaactattttaatttttgaatttcaaggaatttgctataaaaggagaattctgcagcttattata |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43926 |
ttatgtccactttcaagaatatatgtgttatcttaaaactattttaatttttgaatttcaaggaatttgctataaaaggagaattctgcagcttattata |
43827 |
T |
|
| Q |
201 |
gccactgcaaattcaatattgatgtttgatttcaaattgcatagcttgcaagcctgtaattttcatgtgttacattataactattttagtttttaaattc |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43826 |
gccactgcagattcaatattgatgtttgatttcaaattgcatagcttgcaagcctgtaattttcatgtgttacattataactattttagttttaaaattc |
43727 |
T |
|
| Q |
301 |
caagtgagttgctgctacagacgtgaattttgcagcatattaattatagtccatttgcagcatattaattatagcctatgcagtataat |
389 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
43726 |
caagtgagttgctgctacaaacgtgaattttgcagcatattaattatagtccatttccagcatattaattatagcctatgcagaataat |
43638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 77747 - 77359
Alignment:
| Q |
1 |
cttcaccattttgtatttcatcttgctcttactgttcacctccacctctttttctcttgattgcagctcttcattcttcgttttagagatataaaatgca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
77747 |
cttcaccattttgtattccatcttgctcttactgttcacctccacctctctttctcttgtttgcagctcttcattcttcgttttagaaatataaaatgca |
77648 |
T |
|
| Q |
101 |
ttatgttcactttcaagaatatatgtgttatcttaaaactattttaatttttgaatttcaaggaatttgctataaaaggagaattctgcagcttattata |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
77647 |
ttatgtccactttcaagaatatatgtgttatcttaaaactattttaatttttgaatttcaaggaatttgctataaaaggagaattctgcagcttattata |
77548 |
T |
|
| Q |
201 |
gccactgcaaattcaatattgatgtttgatttcaaattgcatagcttgcaagcctgtaattttcatgtgttacattataactattttagtttttaaattc |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
77547 |
gccactgcagattcaatattgatgtttgatttcaaattgcatagcttgcaagcctgtaattttcatgtgttacattataactattttagttttaaaattc |
77448 |
T |
|
| Q |
301 |
caagtgagttgctgctacagacgtgaattttgcagcatattaattatagtccatttgcagcatattaattatagcctatgcagtataat |
389 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
77447 |
caagtgagttgctgctacaaacgtgaattttgcagcatattaattatagtccatttccagcatattaattatagcctatgcagaataat |
77359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 189 - 349
Target Start/End: Original strand, 29644404 - 29644559
Alignment:
| Q |
189 |
cagcttattatagccactgcaaattcaatattgatgtttgatttcaaattgcatagcttgcaagcctgtaattttcatgtg-ttacattataactatttt |
287 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||| |||||| | ||| ||||| ||||||| ||||||||||||||||| || || |||| ||||||| |
|
|
| T |
29644404 |
cagcttattatagccattgcatatttaatattcatgtttaacttctaattgggtagcttgtaagcctgtaattttcatatgcgta---tatagctatttt |
29644500 |
T |
|
| Q |
288 |
agtttttaaattccaagtgagttgctgctacagacgtgaattttgcagcatattaattatag |
349 |
Q |
| |
|
||||||||||||||| ||| | ||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
29644501 |
ggtttttaaattccaaatgatt---tgctacaaacgagaattttgcagcatattaattatag |
29644559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University