View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17034_high_28 (Length: 383)

Name: NF17034_high_28
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17034_high_28
NF17034_high_28
[»] chr1 (12 HSPs)
chr1 (1-366)||(13079874-13080239)
chr1 (12-362)||(19278160-19278510)
chr1 (24-362)||(12962903-12963241)
chr1 (1-366)||(13243533-13243898)
chr1 (1-361)||(13086955-13087315)
chr1 (133-362)||(13272566-13272795)
chr1 (315-348)||(13064231-13064264)
chr1 (289-361)||(13192588-13192660)
chr1 (94-202)||(30367266-30367374)
chr1 (1-47)||(13272434-13272480)
chr1 (98-235)||(13205386-13205523)
chr1 (20-56)||(13064520-13064556)
[»] chr6 (1 HSPs)
chr6 (94-202)||(31376421-31376529)


Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 13080239 - 13079874
Alignment:
Q  1 tcaagtatttgtactcctttggatgcatgatcaagaaatggtaataggaaaatctctaacttatttctaatgcattgatgaaggagtatctcaaagcttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13080239 tcaagtatttgtactcctttggatgcatgatcaagaaatggtaataggaaaatctctaacttatttctaatgcattgatgaaggagtatctcaaagcttt 13080140  T
Q  101 tccttttgagcaatgaatgaaacaatgctctctcttgtttccattcattagaatctaaattgaaaataccaacaccaagaatttcaaaaatttcatggaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13080139 tccttttgagcaatgaatgaaacaatgctctctcttgtttccattcattagaatctaaattgaaaataccaacaccaagaatttcaaaaatttcatggaa 13080040  T
Q  201 gtcagatccttttccatagttgctgaaattcttgctagtgatgtggtgcacattcatgggatcactggtgatcataaagttggcaatatttgtaaaccaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13080039 gtcagatccttttccatagttgctgaaattcttgctagtgatgtggtgcacattcatgggatcactggtgatcataaagttggcaatgtttgtaaaccaa 13079940  T
Q  301 ggtcctttaaaatgaaaagtgccaccatgatgtttcaaaactaaggttgcaaaatcatgaattttg 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13079939 ggtcctttaaaatgaaaagtgccaccatgatgtttcaaaactaaggttgcaaaatcatgaattttg 13079874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 12 - 362
Target Start/End: Complemental strand, 19278510 - 19278160
Alignment:
Q  12 tactcctttggatgcatgatcaagaaatggtaataggaaaatctctaacttatttctaatgcattgatgaaggagtatctcaaagcttttccttttgagc 111  Q
    |||| |||||||||||||||||||||||||||| |   || |||||| ||| |||  ||||  ||| |||  || |||||||| | ||||  ||||||||    
T  19278510 tacttctttggatgcatgatcaagaaatggtaacaaacaattctctagcttcttttgaatgttttgttgatagaatatctcaatgtttttgtttttgagc 19278411  T
Q  112 aatgaatgaaacaatgctctctcttgtttccattcattagaatctaaattgaaaataccaacaccaagaatttcaaaaatttcatggaagtcagatcctt 211  Q
    ||||||||||| | ||| || ||||||||||||||||| ||||| |||||||||||||||| ||| |||| ||||||||| |||||||||||||||||||    
T  19278410 aatgaatgaaatagtgccctttcttgtttccattcattggaatccaaattgaaaataccaagaccgagaacttcaaaaatctcatggaagtcagatcctt 19278311  T
Q  212 ttccatagttgctgaaattcttgctagtgatgtggtgcacattcatgggatcactggtgatcataaagttggcaatatttgtaaaccaaggtcctttaaa 311  Q
    | |||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||  ||||   |||||| |||||| |||||||||||||||||    
T  19278310 tcccatagttactgaaattcttgctgatgatgtggtgcacattcatgggatcactggtgaagataactgtggcaagatttgtgaaccaaggtcctttaaa 19278211  T
Q  312 atgaaaagtgccaccatgatgtttcaaaactaaggttgcaaaatcatgaat 362  Q
     |||||||| || ||||||||||||||||||||||||||| ||||||||||    
T  19278210 ctgaaaagtacctccatgatgtttcaaaactaaggttgcataatcatgaat 19278160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 24 - 362
Target Start/End: Complemental strand, 12963241 - 12962903
Alignment:
Q  24 tgcatgatcaagaaatggtaataggaaaatctctaacttatttctaatgcattgatgaaggagtatctcaaagcttttccttttgagcaatgaatgaaac 123  Q
    ||||||||||||||||||||||||  || |||||| ||| |||  ||||  ||| ||||||  | ||| ||| |||||||||||||||||||||||||      
T  12963241 tgcatgatcaagaaatggtaatagacaactctctagcttcttttgaatgatttgttgaagggatgtcttaaaacttttccttttgagcaatgaatgaagt 12963142  T
Q  124 aatgctctctcttgtttccattcattagaatctaaattgaaaataccaacaccaagaatttcaaaaatttcatggaagtcagatccttttccatagttgc 223  Q
    | ||  |||||||||||||| ||||| ||||| ||||| | || || || |||||||| |||||| |||||| |||| ||||||||| | ||||| ||||    
T  12963141 attgtcctctcttgtttccaatcattggaatccaaatttataagactaataccaagaacttcaaagatttcagggaaatcagatcctctcccataattgc 12963042  T
Q  224 tgaaattcttgctagtgatgtggtgcacattcatgggatcactggtgatcataaagttggcaatatttgtaaaccaaggtcctttaaaatgaaaagtgcc 323  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||     
T  12963041 tgaaattcttgctagtgatatggtgcacattcatgggatcactggtgagggtaaagttggcaatatttgtgaaccaaggtcctttaaaatgaaaagtgct 12962942  T
Q  324 accatgatgtttcaaaactaaggttgcaaaatcatgaat 362  Q
    ||||| ||||||||||| ||||||| |||||||||||||    
T  12962941 accataatgtttcaaaagtaaggttacaaaatcatgaat 12962903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 13243898 - 13243533
Alignment:
Q  1 tcaagtatttgtactcctttggatgcatgatcaagaaatggtaataggaaaatctctaacttatttctaatgcattgatgaaggagtatctcaaagcttt 100  Q
    ||||||| || |||| |||||||||||||||||||||||||||||||| || ||||||  || |||  ||||  ||| |||  || |||||||||| |||    
T  13243898 tcaagtacttttacttctttggatgcatgatcaagaaatggtaataggcaattctctagtttcttttgaatgttttgttgatagaatatctcaaagtttt 13243799  T
Q  101 tccttttgagcaatgaatgaaacaatgctctctcttgtttccattcattagaatctaaattgaaaataccaacaccaagaatttcaaaaatttcatggaa 200  Q
    |  ||||||||||||||||||  | ||| || ||||||| |||||| || ||||| |||||||||||||||||||| |||||||||||||| ||| ||||    
T  13243798 tggttttgagcaatgaatgaagtagtgccctttcttgttcccattccttggaatccaaattgaaaataccaacaccgagaatttcaaaaatctcaaggaa 13243699  T
Q  201 gtcagatccttttccatagttgctgaaattcttgctagtgatgtggtgcacattcatgggatcactggtgatcataaagttggcaatatttgtaaaccaa 300  Q
     ||||||||||| |||||||| ||||| || |||||   |||||||| |||||||||||||||||| ||||| |||||  ||||||||||||| ||||||    
T  13243698 atcagatcctttcccatagttactgaattttttgctgaggatgtggttcacattcatgggatcactagtgatgataaatgtggcaatatttgtgaaccaa 13243599  T
Q  301 ggtcctttaaaatgaaaagtgccaccatgatgtttcaaaactaaggttgcaaaatcatgaattttg 366  Q
    ||||||||||| |||||||| || | ||||||||||||| |||||||| |||||||||||||||||    
T  13243598 ggtcctttaaactgaaaagtacctctatgatgtttcaaagctaaggttacaaaatcatgaattttg 13243533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 13086955 - 13087315
Alignment:
Q  1 tcaagtatttgtactcctttggatgcatgatcaagaaatggtaataggaaaatctctaacttatttctaatgcattgatgaaggagtatctcaaagcttt 100  Q
    |||||||  ||||| | |||||||||||||||||||||| ||||||||||| |||||| ||| |||  ||||  ||| |||| |  ||||||||| ||||    
T  13086955 tcaagtacctgtacacttttggatgcatgatcaagaaatcgtaataggaaattctctagcttcttttgaatgttttgttgaaaggatatctcaaaacttt 13087054  T
Q  101 tccttttgagcaatgaatgaaacaatgctctctcttgtttccattcattagaatctaaattgaaaataccaacaccaagaatttcaaaaatttcatggaa 200  Q
    ||| |||||||||||||||||  | ||  ||||||||||||||||| |   |||| ||||| |||||||||||||| | ||  |||||||||||||||||    
T  13087055 tccctttgagcaatgaatgaagtagtgtcctctcttgtttccattcttcgaaatccaaatttaaaataccaacacctaaaacatcaaaaatttcatggaa 13087154  T
Q  201 gtcagatccttttccatagttgctgaaattcttgctagtgatgtggtgcacattcatgggatcactggtgatcataaagttggcaatatttgtaaaccaa 300  Q
     |||| |||||| ||||||||||| |||||||||||||||||||| ||||||||||   ||||||||||||  ||||| |||||||| ||||| ||||||    
T  13087155 atcagttcctttcccatagttgctaaaattcttgctagtgatgtgatgcacattcaaatgatcactggtgaggataaaattggcaatgtttgtgaaccaa 13087254  T
Q  301 ggtcctttaaaatgaaaagtgccaccatgatgtttcaaaactaaggttgcaaaatcatgaa 361  Q
    ||||||||||||||||||||||| | |  | |||||||  |||| ||| ||||||||||||    
T  13087255 ggtcctttaaaatgaaaagtgcctctacaaagtttcaatcctaaagttacaaaatcatgaa 13087315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 133 - 362
Target Start/End: Original strand, 13272566 - 13272795
Alignment:
Q  133 tcttgtttccattcattagaatctaaattgaaaataccaacaccaagaatttcaaaaatttcatggaagtcagatccttttccatagttgctgaaattct 232  Q
    ||||| ||||||||||| ||||| | ||| | ||||| |||||||||||  ||| |||||||| |||| ||||||||||| ||||| ||||||||||| |    
T  13272566 tcttgcttccattcattggaatccagatttacaatactaacaccaagaacgtcacaaatttcagggaaatcagatcctttcccataattgctgaaatttt 13272665  T
Q  233 tgctagtgatgtggtgcacattcatgggatcactggtgatcataaagttggcaatatttgtaaaccaaggtcctttaaaatgaaaagtgccaccatgatg 332  Q
    |||| || ||||| |||||||||||||||||||  ||||   ||||||||||||| ||||| |||||||||||||||||||||||||| || |||| |||    
T  13272666 tgctggtaatgtgatgcacattcatgggatcacatgtgagggtaaagttggcaatgtttgtgaaccaaggtcctttaaaatgaaaagtacctccataatg 13272765  T
Q  333 tttcaaaactaaggttgcaaaatcatgaat 362  Q
    |||  || |||||||  |||||||||||||    
T  13272766 tttggaacctaaggtaacaaaatcatgaat 13272795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 13064264 - 13064231
Alignment:
Q  315 aaaagtgccaccatgatgtttcaaaactaaggtt 348  Q
    ||||||||||||||||||||||||||||||||||    
T  13064264 aaaagtgccaccatgatgtttcaaaactaaggtt 13064231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 361
Target Start/End: Original strand, 13192588 - 13192660
Alignment:
Q  289 tttgtaaaccaaggtcctttaaaatgaaaagtgccaccatgatgtttcaaaactaaggttgcaaaatcatgaa 361  Q
    ||||| |||||||||||||||||||||||| |||| |||  | |||||||  || ||||| ||||||||||||    
T  13192588 tttgtgaaccaaggtcctttaaaatgaaaaatgcctccacaaagtttcaattctgaggttacaaaatcatgaa 13192660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 30367374 - 30367266
Alignment:
Q  94 aagcttttccttttgagcaatgaatgaaacaatgctctctcttgtttccattcattagaatctaaattgaaaataccaacaccaagaatttcaaaaattt 193  Q
    ||||||||||||||||| | ||||||||||| ||| ||||  | ||||||| | |  |||||  |||||| ||||||| | |||| || |||||||||||    
T  30367374 aagcttttccttttgagaattgaatgaaacattgccctcttctctttccatacgtgggaatcagaattgacaataccacctccaaaaaattcaaaaattt 30367275  T
Q  194 catggaagt 202  Q
    | |||||||    
T  30367274 cttggaagt 30367266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13272434 - 13272480
Alignment:
Q  1 tcaagtatttgtactcctttggatgcatgatcaagaaatggtaatag 47  Q
    |||||||  ||||| ||||| ||||||||||||||||||||||||||    
T  13272434 tcaagtacgtgtacaccttttgatgcatgatcaagaaatggtaatag 13272480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 235
Target Start/End: Original strand, 13205386 - 13205523
Alignment:
Q  98 ttttccttttgagcaatgaatgaaacaatgctctctcttgtttccattcattagaatctaaattgaaaataccaacaccaagaatttcaaaaatttcatg 197  Q
    ||||||||||||| ||||||||||||| ||  |||| |||||||||| | || ||||   |||| ||||||||| | |||| ||  ||||||||||| |     
T  13205386 ttttccttttgagaaatgaatgaaacattgtcctctgttgtttccatacgttggaattagaatttaaaataccatctccaaaaaaatcaaaaatttcttt 13205485  T
Q  198 gaagtcagatccttttccatagttgctgaaattcttgc 235  Q
    |||||  || ||  |||| |||||||  ||||||||||    
T  13205486 gaagttggacccccttccgtagttgccaaaattcttgc 13205523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 13064556 - 13064520
Alignment:
Q  20 tggatgcatgatcaagaaatggtaataggaaaatctc 56  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  13064556 tggatgcatgatcaagaaatggtagtaggaaattctc 13064520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 31376421 - 31376529
Alignment:
Q  94 aagcttttccttttgagcaatgaatgaaacaatgctctctcttgtttccattcattagaatctaaattgaaaataccaacaccaagaatttcaaaaattt 193  Q
    ||||||||||||||||| | ||||||||||| ||  ||||  | ||||||| | |  |||||  |||||| ||||||| | |||| || |||||||||||    
T  31376421 aagcttttccttttgagaattgaatgaaacattgtcctcttctctttccatacgtgggaatcagaattgacaataccacctccaaaaaattcaaaaattt 31376520  T
Q  194 catggaagt 202  Q
    | |||||||    
T  31376521 cttggaagt 31376529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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