View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_high_3 (Length: 720)
Name: NF17034_high_3
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 587; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 66 - 704
Target Start/End: Complemental strand, 4596296 - 4595657
Alignment:
| Q |
66 |
ttgttctttagaggcacagaaggaggcttttttcttttnnnnnnnttgtggttttgagtttgatagctttgctttggtcgtgtatatattgcatgttaaa |
165 |
Q |
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| T |
4596296 |
ttgttctttagaggcacagaaggaggcttttttctttaaaaaaaattgtggttttgagtttgatagccgtgctttggtcgcgtatatattgcatgttaaa |
4596197 |
T |
|
| Q |
166 |
gaaagaataattatttgtcatttggtggtttgtcgttgttatgatgatttaagtatagccttgcatactctactaatgttgcacggcacaagaactattt |
265 |
Q |
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| T |
4596196 |
gaaagaataattatttgtcatttggtggtttgtcgttgttatgatgatttaagtatagccttgcatactctactaatgttgcacggcacaagaactattt |
4596097 |
T |
|
| Q |
266 |
caactgttagatctagagaatgaaaagtttctctctaggtgtataatggttgtcaagttgtggcacagtgcacggcagtaggactagggatgcactcaca |
365 |
Q |
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| T |
4596096 |
caactgttagatctagagaatgaaaagtttctctctaggtgtataatggttgtcaagttgtggcacagtgcacggcagtaggactagggatgcactcaca |
4595997 |
T |
|
| Q |
366 |
tggccttgtgggatttcgggaattgggaggttaatagaatag-tgatgtcaaatggggactctggctattcgccactactgtatgatcaataatttcggt |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4595996 |
tggccttgtgggatttcgggaattgggaggttaatagaataggtgatgtcaaatggggactctggctattcgccactactgtatgatcaataatttcgct |
4595897 |
T |
|
| Q |
465 |
ctccaaaaggttcgattccatgcttttctgtgggaatggagttcgcacgagatgcttgtgtaaaggtccacttttctattgaattgagtctagcgttgtt |
564 |
Q |
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| T |
4595896 |
ctccaaaaggtttgattccatgcttttctgtgggaatggagttcgcacgagatgcttgtgtaaaggtccacttttctattgaattgagtctagcgttgtt |
4595797 |
T |
|
| Q |
565 |
ttgacaaacctaaacattgtgccttctttctgtgtcagtcattacttggtgcctgtgcaattatgttatcagttggtttggtctcatgtgagctgtgagc |
664 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4595796 |
ttgacaaacctaaacattgtgccttctttctgtgtcagtcattacttggtgcctgtgcaattatgttatcagttggtttggtctcatgtgagctgtgagc |
4595697 |
T |
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| Q |
665 |
tgttaagtataggcatgcatgttagaaatgggggaaaacc |
704 |
Q |
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| T |
4595696 |
tgttaagtataggcatgcatgttagaaatgggggaaaacc |
4595657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 4596328 - 4596297
Alignment:
| Q |
15 |
cacagattattaggtaaaagacgtattgtgtt |
46 |
Q |
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| T |
4596328 |
cacagattattaggtaaaagacgtattgtgtt |
4596297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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