View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_high_33 (Length: 290)
Name: NF17034_high_33
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 56402729 - 56402910
Alignment:
| Q |
1 |
ttaaagacctccaagtgctagtttaccatttcaagaacacgcatagcttttattattattaagaaagtagacctcaaaatgnnnnnnncttttatatctg |
100 |
Q |
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| T |
56402729 |
ttaaagatctccaa-tgctagtttaccatttcaagaacacgcttagcttttattattattaagaaagtagacctcaaaatgtttttttcttttatatc-- |
56402825 |
T |
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| Q |
101 |
aatgaaaaattctgaatgcttgttgaagtgggagttctatcttgttgatatgtgataactggtaacctcctacaccgactattgtct |
187 |
Q |
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| T |
56402826 |
--tgaaaaattctgaatgcttgttgaagtgggagttatatattgttgatatgtgataactggtaacctcctacaccgactattgtct |
56402910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 186 - 278
Target Start/End: Original strand, 56402939 - 56403031
Alignment:
| Q |
186 |
ctacaaaaaatcttttagccctaaatccgacaatgagttttactggtaagacaatgttgttgtcatgataaagatacatagtttcttccttct |
278 |
Q |
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| T |
56402939 |
ctacaaacaatctttttgccctaaatccgacaatgagttttactggtaagacaatgttgttgtcatgataaagatatatagtttcttccttct |
56403031 |
T |
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