View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_high_37 (Length: 282)
Name: NF17034_high_37
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_high_37 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 86 - 262
Target Start/End: Original strand, 7737585 - 7737761
Alignment:
| Q |
86 |
gtcgtaaatgtgagtctcttttgtgatctttcaatgttgacatgatcattaatttttccttttatttcatcaatttgtaacaatgctcttattttgatat |
185 |
Q |
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| T |
7737585 |
gtcgtaaatgtgagtctcttttgtgatctttcaatgttgacatgatccttaatttttccttttatttcatcaatttgtaacaattctcttattttgatat |
7737684 |
T |
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| Q |
186 |
aattgttattattgtagctttgttttgtatgattattagattttcttctaataatttgttgaaattaattatattgc |
262 |
Q |
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| T |
7737685 |
aattgttattattgtagctttgttttgtatgattattagattttcatctaataatttgttgaaattaattatattgc |
7737761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 7737422 - 7737461
Alignment:
| Q |
19 |
tagggaaactgaagatttgaaggacaacctaatgtttttt |
58 |
Q |
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| T |
7737422 |
tagggaaactgaagacttgaaggacaacctaatgtttttt |
7737461 |
T |
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