View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_high_41 (Length: 262)
Name: NF17034_high_41
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 5277915 - 5277863
Alignment:
| Q |
12 |
tgaaagctatagatgtaagatgagttttcaaaataacctattttctggtgaga |
64 |
Q |
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| T |
5277915 |
tgaaagctatagatgtaagatgagttttcaaaataacctattttctggtgaga |
5277863 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 12288823 - 12288872
Alignment:
| Q |
197 |
gaagtttgaaaagcatagaaatgaaaaataagtgaatgctacaatgtata |
246 |
Q |
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| T |
12288823 |
gaagcttgaaaaggatggaaatgaaaaagaagtgaatgctacaatgtata |
12288872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 12317581 - 12317630
Alignment:
| Q |
197 |
gaagtttgaaaagcatagaaatgaaaaataagtgaatgctacaatgtata |
246 |
Q |
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|||| |||||||| || ||||||||||| ||||||||||||||||||||| |
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| T |
12317581 |
gaagcttgaaaaggatggaaatgaaaaagaagtgaatgctacaatgtata |
12317630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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