View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17034_high_44 (Length: 246)

Name: NF17034_high_44
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17034_high_44
NF17034_high_44
[»] chr8 (9 HSPs)
chr8 (18-234)||(2027996-2028212)
chr8 (27-234)||(1950784-1950991)
chr8 (53-234)||(2053814-2053995)
chr8 (17-234)||(2032531-2032748)
chr8 (54-234)||(2049809-2049989)
chr8 (34-234)||(10767186-10767387)
chr8 (54-234)||(2036623-2036803)
chr8 (29-234)||(2045975-2046180)
chr8 (107-154)||(2021932-2021979)
[»] chr4 (1 HSPs)
chr4 (30-219)||(48909060-48909249)
[»] chr2 (3 HSPs)
chr2 (107-152)||(28713715-28713760)
chr2 (107-152)||(28743615-28743660)
chr2 (107-152)||(28736989-28737034)
[»] chr1 (6 HSPs)
chr1 (108-157)||(16419767-16419816)
chr1 (114-157)||(16443101-16443144)
chr1 (102-157)||(16499340-16499395)
chr1 (108-157)||(16416588-16416637)
chr1 (108-157)||(16427507-16427556)
chr1 (108-157)||(16438211-16438260)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 2027996 - 2028212
Alignment:
Q  18 atatctagcttcagagccactacaaacaaaagggaaatgggaaccactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttg 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2027996 atatctagcttcagaaccactacaaacaaaagggaaatgggaactactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttg 2028095  T
Q  118 atgaaacaaaagctggtgtaaaaggacttgttgatgcaggagttgagaagataccaagcttattccatcatcaaccagacaaatatgagatagccaacaa 217  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  2028096 atgaaacaaaagctggtgtaaaaggacttgttgatggaggagttgagaagataccaagtttattccatcatcaacctgacaaatatgagatagcctacaa 2028195  T
Q  218 cacaagccatgttattc 234  Q
    |||||||||||||||||    
T  2028196 cacaagccatgttattc 2028212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 27 - 234
Target Start/End: Complemental strand, 1950991 - 1950784
Alignment:
Q  27 ttcagagccactacaaacaaaagggaaatgggaaccactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaa 126  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  1950991 ttcagaaccactacaaacaaaagtgaaatgggaaccactaatacaaccaagcctaaccttgattctacattcaatgaacgtaaagcatttgatgaaacaa 1950892  T
Q  127 aagctggtgtaaaaggacttgttgatgcaggagttgagaagataccaagcttattccatcatcaaccagacaaatatgagatagccaacaacacaagcca 226  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  1950891 aagctggtgtaaaaggacttgttgatggaggagttgagaagataccaagtttattccatcatcaacctgacaaatatgagatagcctacaacacaagcca 1950792  T
Q  227 tgttattc 234  Q
    ||||||||    
T  1950791 tgttattc 1950784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 53 - 234
Target Start/End: Original strand, 2053814 - 2053995
Alignment:
Q  53 aatgggaaccactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgat 152  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2053814 aatgggaaccattgatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgat 2053913  T
Q  153 gcaggagttgagaagataccaagcttattccatcatcaaccagacaaatatgagatagccaacaacacaagccatgttattc 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  2053914 gcaggagttgagaagataccaagcttattccatcatcaaccagacaaatatgagatagccaacaatacaagcaatgttattc 2053995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 2032531 - 2032748
Alignment:
Q  17 catatctagcttcagagccactacaaacaaaagggaaatgggaaccactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcattt 116  Q
    ||||||||||| |||| |||||||||||| |||  |||||||||||||    ||||||||||||||||||||||| | ||| | ||||||||||| ||||    
T  2032531 catatctagctacagaaccactacaaacataagaaaaatgggaaccacaggcacaaccaagcctaaccttgattctatattgagtgaacgcaaagaattt 2032630  T
Q  117 gatgaaacaaaagctggtgtaaaaggacttgttgatgcaggagttgagaagataccaagcttattccatcatcaaccagacaaatatgagatagccaaca 216  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  2032631 gatgaaacaaaagctggtgtaaaaggacttgttgatgcaggacttaagaagataccaagcttattccatcatcaacctgacaaatatgagaaagccaaca 2032730  T
Q  217 acacaagccatgttattc 234  Q
    |||  ||||||| |||||    
T  2032731 acatgagccatgctattc 2032748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 54 - 234
Target Start/End: Original strand, 2049809 - 2049989
Alignment:
Q  54 atgggaaccactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 153  Q
    |||||||||| | ||||||||||||||||| ||||||| | ||| | ||| |||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  2049809 atgggaaccattgatacaaccaagcctaactttgattctatattgagtgagcgcatagcatttgatgaaacaaaagcaggtgtaaaaggacttgttgatg 2049908  T
Q  154 caggagttgagaagataccaagcttattccatcatcaaccagacaaatatgagatagccaacaacacaagccatgttattc 234  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  2049909 caggagttaagaagataccaaccttattccatcatcaaccagacaaatatgaggaagccaacaacacaagccatgttattc 2049989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 234
Target Start/End: Original strand, 10767186 - 10767387
Alignment:
Q  34 ccactacaaaca-aaagggaaatgggaaccactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaagctg 132  Q
    |||||||||||| ||||  |||||||||||||| |||||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||    
T  10767186 ccactacaaacagaaagaaaaatgggaaccactgatacaaccaagcctaaccttgattctttattgaatgaacgcaaagcatttgatgaaacaaaagctg 10767285  T
Q  133 gtgtaaaaggacttgttgatgcaggagttgagaagataccaagcttattccatcatcaaccagacaaatatgagatagccaacaacacaagccatgttat 232  Q
    ||||||||||||||||||||| |||| || | ||||| || | |||||||||||||||||| || ||||||||| ||||| |||||||||||||||||||    
T  10767286 gtgtaaaaggacttgttgatggaggacttaacaagatccctaccttattccatcatcaacctgataaatatgagttagcctacaacacaagccatgttat 10767385  T
Q  233 tc 234  Q
    ||    
T  10767386 tc 10767387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 54 - 234
Target Start/End: Original strand, 2036623 - 2036803
Alignment:
Q  54 atgggaaccactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 153  Q
    |||||||||| | || |||||| |||||||||||||||   | | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  2036623 atgggaaccattgatgcaaccatgcctaaccttgattctgtaatgaatgaacgcaaagcatttgatgaaacaaaatctggtgtgaaaggacttgttgatg 2036722  T
Q  154 caggagttgagaagataccaagcttattccatcatcaaccagacaaatatgagatagccaacaacacaagccatgttattc 234  Q
     |||| || ||| ||||||     ||||||||  |||||| |||||||| |||| ||||||||||||||||||||||||||    
T  2036723 gaggacttaagaggatacctgagatattccattgtcaacctgacaaatacgagaaagccaacaacacaagccatgttattc 2036803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 234
Target Start/End: Original strand, 2045975 - 2046180
Alignment:
Q  29 cagagccactacaaacaaaagggaaatgggaaccactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaa 128  Q
    |||| ||||||||| || |||  | |||||||||| | || |||||| |||||||||||||||   | | ||||||||||||||||||||||||||||||    
T  2045975 cagaaccactacaagcataagaaatatgggaaccattgatgcaaccatgcctaaccttgattctgtaatgaatgaacgcaaagcatttgatgaaacaaaa 2046074  T
Q  129 gctggtgtaaaaggacttgttgatgcaggagttgagaagataccaagcttattccatcatcaaccagacaaatatgagatagccaacaacacaagccatg 228  Q
     ||||||| |||||||||||||||| |||| || ||| ||||||     ||||||||  |||||| ||||||||  ||| ||||||||||||||||||||    
T  2046075 tctggtgtgaaaggacttgttgatggaggacttaagaggatacctgagatattccattgtcaacctgacaaataccagaaagccaacaacacaagccatg 2046174  T
Q  229 ttattc 234  Q
    ||||||    
T  2046175 ttattc 2046180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 2021932 - 2021979
Alignment:
Q  107 caaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatgc 154  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||    
T  2021932 caaagcatttgatgaaacaaaagatggtgtcaaaggacttgttgatgc 2021979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 30 - 219
Target Start/End: Complemental strand, 48909249 - 48909060
Alignment:
Q  30 agagccactacaaacaaaagggaaatgggaaccactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaag 129  Q
    ||||||||| |||| | |||  |||||||||||||  ||||||||||||||||| ||||||| | ||| | |||||||||||||||||||||||||||||    
T  48909249 agagccactgcaaaaataagaaaaatgggaaccacggatacaaccaagcctaactttgattctatattgagtgaacgcaaagcatttgatgaaacaaaag 48909150  T
Q  130 ctggtgtaaaaggacttgttgatgcaggagttgagaagataccaagcttattccatcatcaaccagacaaatatgagatagccaacaaca 219  Q
    || ||||||||||| ||||||||| |||  || ||||||| |||||||| ||||||||||||||||||||| ||||||||||| ||||||    
T  48909149 ctagtgtaaaaggatttgttgatgaaggtattaagaagatcccaagctttttccatcatcaaccagacaaaaatgagatagcctacaaca 48909060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 28713760 - 28713715
Alignment:
Q  107 caaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgat 152  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||    
T  28713760 caaagcatttgatgaaacaaaagctggtgttaaaggccttgttgat 28713715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 28743660 - 28743615
Alignment:
Q  107 caaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgat 152  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||    
T  28743660 caaagcatttgatgaaacaaaagctggtgttaaaggccttgttgat 28743615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 28737034 - 28736989
Alignment:
Q  107 caaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgat 152  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||||    
T  28737034 caaagcatttgatgaaagaaaagctggtgttaaaggccttgttgat 28736989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 16419816 - 16419767
Alignment:
Q  108 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcagg 157  Q
    ||||| |||||||||||||||  |||||||||||||||||||||||||||    
T  16419816 aaagcttttgatgaaacaaaatttggtgtaaaaggacttgttgatgcagg 16419767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 16443144 - 16443101
Alignment:
Q  114 tttgatgaaacaaaagctggtgtaaaaggacttgttgatgcagg 157  Q
    |||||||||||||||  |||||| ||||||||||||||||||||    
T  16443144 tttgatgaaacaaaacttggtgttaaaggacttgttgatgcagg 16443101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 16499340 - 16499395
Alignment:
Q  102 gaacgcaaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcagg 157  Q
    |||| |||||| |||||||| ||||||  |||||| ||||||||||||||||||||    
T  16499340 gaactcaaagcttttgatgatacaaaacttggtgttaaaggacttgttgatgcagg 16499395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 16416637 - 16416588
Alignment:
Q  108 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcagg 157  Q
    ||||| |||||||||||||||  |||||| ||||||||||| ||||||||    
T  16416637 aaagcttttgatgaaacaaaacttggtgttaaaggacttgtcgatgcagg 16416588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 16427556 - 16427507
Alignment:
Q  108 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcagg 157  Q
    ||||| |||||||||||||||  |||||| | ||||||||||||||||||    
T  16427556 aaagcttttgatgaaacaaaacttggtgttagaggacttgttgatgcagg 16427507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 16438211 - 16438260
Alignment:
Q  108 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcagg 157  Q
    ||||| |||||||||||||||   ||||| ||||||||||||||||||||    
T  16438211 aaagcttttgatgaaacaaaattgggtgttaaaggacttgttgatgcagg 16438260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University