View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17034_high_6 (Length: 656)

Name: NF17034_high_6
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17034_high_6
NF17034_high_6
[»] chr3 (3 HSPs)
chr3 (18-647)||(8102231-8102860)
chr3 (45-288)||(40147438-40147681)
chr3 (362-642)||(40147090-40147370)
[»] chr4 (11 HSPs)
chr4 (95-271)||(7656227-7656403)
chr4 (114-272)||(7606108-7606266)
chr4 (110-272)||(7636932-7637094)
chr4 (110-286)||(7615118-7615294)
chr4 (110-190)||(7628556-7628636)
chr4 (416-544)||(7615418-7615546)
chr4 (417-543)||(7655961-7656087)
chr4 (416-549)||(7628789-7628922)
chr4 (417-642)||(7637236-7637461)
chr4 (491-642)||(7606479-7606630)
chr4 (215-285)||(39070932-39071002)
[»] chr7 (6 HSPs)
chr7 (110-286)||(8936167-8936343)
chr7 (114-272)||(8941826-8941983)
chr7 (110-245)||(8913705-8913840)
chr7 (339-544)||(8935924-8936129)
chr7 (437-544)||(8910985-8911092)
chr7 (491-529)||(8938715-8938753)
[»] chr6 (4 HSPs)
chr6 (118-283)||(6500375-6500540)
chr6 (409-543)||(6500647-6500781)
chr6 (107-176)||(11968792-11968861)
chr6 (484-525)||(11969168-11969209)
[»] chr8 (3 HSPs)
chr8 (105-186)||(15196335-15196416)
chr8 (228-272)||(15745030-15745074)
chr8 (424-504)||(15196011-15196091)
[»] scaffold0190 (2 HSPs)
scaffold0190 (105-176)||(4319-4390)
scaffold0190 (215-272)||(4435-4492)


Alignment Details
Target: chr3 (Bit Score: 602; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 18 - 647
Target Start/End: Original strand, 8102231 - 8102860
Alignment:
Q  18 acaaattcaagaatatgaactaaaatagtaccaaaccaattttgcaaattttaaacccacgttaattggatacaaagtccatgaaaacaggatcatttcc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8102231 acaaattcaagaatatgaactaaaatagtaccaaaccaattttgcaaattttaaacccacgttaattggatacaaagttcatgaaaacaggatcatttcc 8102330  T
Q  118 cattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatttcca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8102331 cattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatttcca 8102430  T
Q  218 ctgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacctctgggaactgctactagccatcacatgataatcggcaacgttac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  8102431 ctgcgaactgccactggttttccccatccaaaattattgccataaacatcaaaccactgggaactgctactagccaacacatgataatcggcaacgttac 8102530  T
Q  318 tatcaccaagtctatagatgattggatttctcacccaattctcatagtcattcttcaacttctcatttgagtgcaaagaaatcgtttcgtgcatcttcca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8102531 tatcaccaagtctatagatgattggatttctcacccaattctcatagtcattcttcaacttctcatttgagtgcaaacaaatcgtttcgtgcatcttcca 8102630  T
Q  418 agcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatggt 517  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8102631 agcacatttaccaaacccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatggt 8102730  T
Q  518 ggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgtggctctaattggtcggaacggatcactgagcaccaaaggtgtgcaa 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8102731 ggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgtgggtctaattggtcggaacggatcactgagcaccaaaggtgtgcaa 8102830  T
Q  618 aaagtgcttgaagggaagatattttcttcg 647  Q
    ||||||||||||||||||||||||| ||||    
T  8102831 aaagtgcttgaagggaagatattttgttcg 8102860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 45 - 288
Target Start/End: Complemental strand, 40147681 - 40147438
Alignment:
Q  45 gtaccaaaccaattttgcaaattttaaacccacgttaattggatacaaagtccatgaaaacaggatcatttcccattgcctccaaaatcttgtgaggaag 144  Q
    |||||||||  ||||||||||  |||||| |||  ||||| || ||||  ||||||||  || | |||||||||||||||||||||||||||||||||||    
T  40147681 gtaccaaactgattttgcaaaccttaaactcacactaattagacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaag 40147582  T
Q  145 acatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatttccactgcgaactgccactggttttccccat 244  Q
    ||| ||||||| |||||| |||||||||||| ||||||||||||||| || || |||||||  |||||||||||||||||||||||| |||| |||||||    
T  40147581 acacacttgaaagtccatgctaccttcttcttttccagcaaatacagtaatcattccacttattttatttccactgcgaactgccacaggttctccccat 40147482  T
Q  245 ccaaaattattgccataaacatcaaacctctgggaactgctact 288  Q
    ||||||| ||| |||||||||||||||| | ||||| |||||||    
T  40147481 ccaaaatcattaccataaacatcaaaccacggggaattgctact 40147438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 362 - 642
Target Start/End: Complemental strand, 40147370 - 40147090
Alignment:
Q  362 tagtcattcttcaacttctcatttgagtgcaaagaaatcgtttcgtgcatcttccaagcacatttaccaagcccgccttcttccaacaactccccaactt 461  Q
    |||| |||||||||||  |||||||| |||||||||||| ||| ||| |||  |||||||| |||||||||||| || |||||||||||||| ||  |||    
T  40147370 tagtgattcttcaactcttcatttgactgcaaagaaatcattttgtgtatcgcccaagcacctttaccaagcccaccatcttccaacaactctcccgctt 40147271  T
Q  462 tcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatggtggaacaaacctttgtctaactcctatcccgaccataaaatatgc 561  Q
    |||||| |||| || || || ||||||||||||||||||||||||| |||||||||||||||||||||  |||| |||||||| |||||||| ||||  |    
T  40147270 tcattgtaaccctacaaacttcaacagcatttccaaaataatcttcaggcaatggtggaacaaaccttgatctagctcctatcgcgaccatataataaac 40147171  T
Q  562 gttctcttgtggctctaattggtcggaacggatcactgagcaccaaaggtgtgcaaaaagtgcttgaagggaagatatttt 642  Q
     |  || ||||| || ||||| | |||||||||||| |||| |||||| |||| |||||||| ||| ||||| ||||||||    
T  40147170 ttcttcgtgtgggtcaaattgtttggaacggatcacagagcgccaaagatgtgtaaaaagtgattggagggatgatatttt 40147090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 6e-45; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 95 - 271
Target Start/End: Complemental strand, 7656403 - 7656227
Alignment:
Q  95 tccatgaaaacaggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaa 194  Q
    ||||||||  ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||| |||||||||||||||||||  ||  ||    
T  7656403 tccatgaactcaggatcatttcccattgcctccaaaatcttgtaaggaagacacacttgaaggtcaatgctagcttcttctattccagcaaaggcacaaa 7656304  T
Q  195 acagtccactttgtttatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaac 271  Q
     || |||| ||  |||||||||||| ||||||||||| || |||||||||||||||| ||| |||||||||||||||    
T  7656303 ccattccatttgttttatttccactacgaactgccacaggctttccccatccaaaatcattaccataaacatcaaac 7656227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 114 - 272
Target Start/End: Original strand, 7606108 - 7606266
Alignment:
Q  114 ttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatt 213  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||   |  | |||| ||  |||||     
T  7606108 ttcccattgcctccaaaaccttgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacatttacaattccatttattttata 7606207  T
Q  214 tccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacc 272  Q
    |||||| |||||||| |  |||||||||||||| |||| ||| ||||||||||||||||    
T  7606208 tccactacgaactgctataggttttccccatccgaaatcattaccataaacatcaaacc 7606266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 110 - 272
Target Start/End: Original strand, 7636932 - 7637094
Alignment:
Q  110 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtt 209  Q
    |||||||||||| ||||||||||||   |||||||||| ||||||||||| |||||||||||||||||||| |||||||| | ||  |||||| ||  ||    
T  7636932 tcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctatactaccttcttctattccggcaaataccgtaataagtccatttattt 7637031  T
Q  210 tatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacc 272  Q
    ||| |||||| ||||||||||  || |||||||||||||||| ||| ||||||||||||||||    
T  7637032 tatatccactacgaactgccagaggctttccccatccaaaatcattaccataaacatcaaacc 7637094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 110 - 286
Target Start/End: Original strand, 7615118 - 7615294
Alignment:
Q  110 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtt 209  Q
    |||||||||||||||||||||||||  || | |||||| |||||||| || |||||||||||||||||||||||||| || | ||  |||||| ||  ||    
T  7615118 tcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccgtaataagtccatttcctt 7615217  T
Q  210 tatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacctctgggaactgcta 286  Q
    ||| |||||| ||||||||||| || |||||||| ||||||| ||| |||||||||||||||| | | |||||||||    
T  7615218 tatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccacggagaactgcta 7615294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 7628556 - 7628636
Alignment:
Q  110 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaataca 190  Q
    ||||||||||||||||||||||||| || ||||||||| | ||||||||| ||||||||||||||||||||||||||||||    
T  7628556 tcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctattccagcaaataca 7628636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 416 - 544
Target Start/End: Original strand, 7615418 - 7615546
Alignment:
Q  416 caagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatg 515  Q
    ||||||| ||||| ||| || |||||||||| |||||||||||||||||||  ||||||| ||  || ||  |||||||||||||||| ||| || ||||    
T  7615418 caagcacctttacaaagtccaccttcttccaccaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatattctggtaatg 7615517  T
Q  516 gtggaacaaacctttgtctaactcctatc 544  Q
    ||||||| |||||| ||| ||||||||||    
T  7615518 gtggaactaaccttggtcgaactcctatc 7615546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 417 - 543
Target Start/End: Complemental strand, 7656087 - 7655961
Alignment:
Q  417 aagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatgg 516  Q
    |||||| |||||||| ||| ||||| ||||||||||||||||||||||||  || |    || ||| ||  || ||||||||||||||||||||||||||    
T  7656087 aagcacctttaccaatcccaccttcctccaacaactccccaactttcattttaaacccgcaacctataatcgcgtttccaaaataatcttccggcaatgg 7655988  T
Q  517 tggaacaaacctttgtctaactcctat 543  Q
    ||||||||  ||| |||||||||||||    
T  7655987 tggaacaagtcttggtctaactcctat 7655961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 416 - 549
Target Start/End: Original strand, 7628789 - 7628922
Alignment:
Q  416 caagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatg 515  Q
    ||||||| ||||| ||| || ||||| |||||||| ||| || ||||||||  ||||||| ||  || ||  |||||||||||||||||||| || ||||    
T  7628789 caagcacctttacaaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaatg 7628888  T
Q  516 gtggaacaaacctttgtctaactcctatcccgac 549  Q
    |||||| || |||| |||||||||||||| ||||    
T  7628889 gtggaataagccttggtctaactcctatcgcgac 7628922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 417 - 642
Target Start/End: Original strand, 7637236 - 7637461
Alignment:
Q  417 aagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatgg 516  Q
    |||||| ||||| ||| || ||||| |||||||| |||||| ||||||||  ||||||| ||  || ||  |||||||||||||||||||| || || ||    
T  7637236 aagcacctttacaaagtccaccttcctccaacaattccccagctttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaacgg 7637335  T
Q  517 tggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgtggctctaattggtcggaacggatcactgagcaccaaaggtgtgca 616  Q
    |||||| |||||| ||| |||||||||| ||||  ||  | || | |  |||||||| || ||||| | | ||||| ||||  ||||||||| ||| |      
T  7637336 tggaactaaccttggtcgaactcctatcacgactctattaaatacttcttcttgtgggtcaaattgtttgaaacgggtcacatagcaccaaacgtgagtt 7637435  T
Q  617 aaaagtgcttgaagggaagatatttt 642  Q
    ||||||||||| || |||||||||||    
T  7637436 aaaagtgcttgtagagaagatatttt 7637461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 491 - 642
Target Start/End: Original strand, 7606479 - 7606630
Alignment:
Q  491 tttccaaaataatcttccggcaatggtggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgtggctctaattggtcggaac 590  Q
    ||||||||||||||||| || |||||||||||||||||| ||| |||||||||| |||| | |  |||| | |  |||||| | || ||||| | |||||    
T  7606479 tttccaaaataatcttctggtaatggtggaacaaaccttggtccaactcctatcacgactagattatatacttcttcttgtaggtcaaattgtttggaac 7606578  T
Q  591 ggatcactgagcaccaaaggtgtgcaaaaagtgcttgaagggaagatatttt 642  Q
    |||  || |||||||||||||| |  ||||| ||||| || |||| ||||||    
T  7606579 ggacgacagagcaccaaaggtgagttaaaagcgcttgtagagaagttatttt 7606630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 39070932 - 39071002
Alignment:
Q  215 ccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacctctgggaactgct 285  Q
    ||||| ||||| |||||||| |||||||| ||||||| ||||||| |||||||||||||| | ||||||||    
T  39070932 ccacttcgaaccgccactggctttccccagccaaaatcattgccaaaaacatcaaacctcggagaactgct 39071002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 110 - 286
Target Start/End: Complemental strand, 8936343 - 8936167
Alignment:
Q  110 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtt 209  Q
    |||||||||||||||||||||||||  |  |||||||| ||||||||||| |||||||||||||||||||| |||||||| | ||  |||||| ||  ||    
T  8936343 tcatttcccattgcctccaaaatctcatatggaagacaaacttgaaggtcaatactaccttcttctattccggcaaatactgtaataagtccatttgctt 8936244  T
Q  210 tatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacctctgggaactgcta 286  Q
    ||| |||||  ||| |||| || || |||||||||||||||| ||| |||||||||||||||| | | |||||||||    
T  8936243 tatatccaccacgacctgctacaggctttccccatccaaaatcattaccataaacatcaaaccacggagaactgcta 8936167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 114 - 272
Target Start/End: Complemental strand, 8941983 - 8941826
Alignment:
Q  114 ttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatt 213  Q
    |||||||||||||||||| || || ||||||||||||||||||||| ||||||||||||||||||||||||||||||   |  | |||| ||  |||||     
T  8941983 ttcccattgcctccaaaacctcgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacatttacaattccatttattttata 8941884  T
Q  214 tccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacc 272  Q
    |||||| || ||||| |  |||||||||||||| |||| ||| ||||||||||||||||    
T  8941883 tccactacg-actgctataggttttccccatccgaaatcattaccataaacatcaaacc 8941826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 110 - 245
Target Start/End: Complemental strand, 8913840 - 8913705
Alignment:
Q  110 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtt 209  Q
    |||||||||||| ||||||||||||   |||||||||| ||||||||||| ||| ||||||||||||||||  ||||||| | ||  |||||| ||  ||    
T  8913840 tcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctataataccttcttctattccgacaaatactgtaataagtccatttattt 8913741  T
Q  210 tatttccactgcgaactgccactggttttccccatc 245  Q
    ||| |||||| ||||||||||| || ||||||||||    
T  8913740 tatatccactacgaactgccacaggctttccccatc 8913705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 339 - 544
Target Start/End: Complemental strand, 8936129 - 8935924
Alignment:
Q  339 ttggatttctcacccaattctcatagtcattcttcaacttctcatttgagtgcaaagaaatcgtttcgtgcatcttccaagcacatttaccaagcccgcc 438  Q
    |||||||||| | ||||  |||||||| |||||||||||||||||  | ||| |||| |||    | || |||||  ||||||| ||||| ||| || ||    
T  8936129 ttggatttcttaaccaagactcatagtgattcttcaacttctcatcagtgtgtaaagcaattaacttgttcatctcacaagcacctttacaaagtccacc 8936030  T
Q  439 ttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatggtggaacaaacctttgtctaact 538  Q
    ||| | ||||||||||||| || |||||  ||||||| ||  || ||| |||||||||||||||| ||| || ||||||||||| |||||| ||| ||||    
T  8936029 ttccttcaacaactccccagctgtcattttaaccatacaacttataactgcatttccaaaataatattctggtaatggtggaactaaccttggtccaact 8935930  T
Q  539 cctatc 544  Q
    ||||||    
T  8935929 cctatc 8935924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 437 - 544
Target Start/End: Complemental strand, 8911092 - 8910985
Alignment:
Q  437 ccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatggtggaacaaacctttgtctaa 536  Q
    ||||| ||||||| ||||||||||||||||  ||||||| ||  |||||  |||||||||||||||| ||| || ||||||||||| |||||| ||| ||    
T  8911092 ccttcctccaacagctccccaactttcattttaaccatacaacttacaattgcatttccaaaataatattctggtaatggtggaactaaccttggtccaa 8910993  T
Q  537 ctcctatc 544  Q
    ||||||||    
T  8910992 ctcctatc 8910985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 491 - 529
Target Start/End: Complemental strand, 8938753 - 8938715
Alignment:
Q  491 tttccaaaataatcttccggcaatggtggaacaaacctt 529  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  8938753 tttccaaaataatcttctggtaatggtggaacaaacctt 8938715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 8e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 118 - 283
Target Start/End: Original strand, 6500375 - 6500540
Alignment:
Q  118 cattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatttcca 217  Q
    |||||| |||||| |||||| ||||||||| ||||||||||| |||||||||| |||| ||||||||||||||  || ||  |||  |  ||||||| ||    
T  6500375 cattgcttccaaagtcttgtaaggaagacaaacttgaaggtctatactaccttattcttttccagcaaatacactaaccataccatctattttatttaca 6500474  T
Q  218 ctgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacctctgggaactg 283  Q
    ||||||| |||||| ||||| ||||||||||||| ||| ||||||| |||||||| | ||||||||    
T  6500475 ctgcgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaaccacggggaactg 6500540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 409 - 543
Target Start/End: Original strand, 6500647 - 6500781
Alignment:
Q  409 catcttccaagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttcc 508  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||| ||| |||||||   |||| || || |||  ||||||||||||||||||||||      
T  6500647 catctcccaagcacctttaccaatcccgccttcttccaacaactcaccagctttcatgctaaccctacaatctatcacagcatttccaaaataatcttgt 6500746  T
Q  509 ggcaatggtggaacaaacctttgtctaactcctat 543  Q
    || ||| ||||||||| |||| ||||||| |||||    
T  6500747 ggtaatagtggaacaagccttggtctaacgcctat 6500781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 11968792 - 11968861
Alignment:
Q  107 ggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttcta 176  Q
    |||||||||  ||| |||||||||||||||| ||||||||| |||| || ||| ||||||||||||||||    
T  11968792 ggatcatttttcatggcctccaaaatcttgtaaggaagacacacttcaaagtctatactaccttcttcta 11968861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 525
Target Start/End: Original strand, 11969168 - 11969209
Alignment:
Q  484 aacagcatttccaaaataatcttccggcaatggtggaacaaa 525  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||    
T  11969168 aacagcatttccaaaataatcctccggtaatggtgaaacaaa 11969209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 15196416 - 15196335
Alignment:
Q  105 caggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaa 186  Q
    |||| |||||||||||  |||||||||||||||  |||||||| |||| || ||||||||| ||||||||| | ||||||||    
T  15196416 cagggtcatttcccatgacctccaaaatcttgtatggaagacacacttcaaagtccatacttccttcttctttaccagcaaa 15196335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 15745074 - 15745030
Alignment:
Q  228 ccactggttttccccatccaaaattattgccataaacatcaaacc 272  Q
    |||| ||||||||||| ||||||| ||||||||||||||||||||    
T  15745074 ccacaggttttccccaaccaaaatcattgccataaacatcaaacc 15745030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 424 - 504
Target Start/End: Complemental strand, 15196091 - 15196011
Alignment:
Q  424 tttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatc 504  Q
    ||||||||||||||||||||| || | |||||  |||||||||| ||||  | || |||  | ||||||||||||||||||    
T  15196091 tttaccaagcccgccttcttctaatagctccctgactttcattgtaaccccacaaactatcatagcatttccaaaataatc 15196011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 4319 - 4390
Alignment:
Q  105 caggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttcta 176  Q
    ||||||||||||  |||||||||||||| |    |||||||||||||| ||||||||| ||||| |||||||    
T  4319 caggatcatttctaattgcctccaaaatttcacaaggaagacatacttcaaggtccatgctaccatcttcta 4390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 4435 - 4492
Alignment:
Q  215 ccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacc 272  Q
    ||||| |||||  |||| ||||||||||| ||||||| ||| ||||||||||||||||    
T  4435 ccacttcgaacccccacaggttttccccaaccaaaatcattaccataaacatcaaacc 4492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University