View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17034_high_8 (Length: 595)

Name: NF17034_high_8
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17034_high_8
NF17034_high_8
[»] chr4 (38 HSPs)
chr4 (18-583)||(27522971-27523539)
chr4 (18-342)||(27505513-27505838)
chr4 (19-342)||(27479906-27480231)
chr4 (18-342)||(27486987-27487315)
chr4 (18-292)||(27469464-27469739)
chr4 (25-337)||(27525929-27526241)
chr4 (28-222)||(27476701-27476895)
chr4 (18-342)||(27460482-27460801)
chr4 (79-276)||(27502011-27502210)
chr4 (22-288)||(27513641-27513908)
chr4 (34-203)||(27516560-27516729)
chr4 (18-299)||(27473896-27474165)
chr4 (25-184)||(27498426-27498585)
chr4 (19-184)||(27444764-27444929)
chr4 (22-190)||(27502771-27502939)
chr4 (18-197)||(27500295-27500474)
chr4 (18-204)||(27466825-27467011)
chr4 (32-184)||(27431118-27431270)
chr4 (25-183)||(27501328-27501486)
chr4 (25-182)||(27557500-27557657)
chr4 (18-190)||(27507777-27507949)
chr4 (25-154)||(27503933-27504062)
chr4 (19-161)||(27414297-27414439)
chr4 (25-153)||(27475580-27475708)
chr4 (98-184)||(27554393-27554479)
chr4 (25-154)||(27468327-27468456)
chr4 (25-154)||(27524535-27524664)
chr4 (25-152)||(27514902-27515029)
chr4 (32-154)||(27424514-27424636)
chr4 (400-465)||(27460849-27460914)
chr4 (44-161)||(27563339-27563456)
chr4 (18-154)||(17970303-17970439)
chr4 (40-195)||(27567281-27567436)
chr4 (56-192)||(27423264-27423400)
chr4 (25-137)||(27508863-27508975)
chr4 (43-154)||(27585717-27585828)
chr4 (40-154)||(27412690-27412804)
chr4 (112-161)||(27559233-27559282)
[»] chr5 (4 HSPs)
chr5 (18-215)||(1759252-1759453)
chr5 (32-190)||(1754206-1754363)
chr5 (25-154)||(1756757-1756886)
chr5 (241-293)||(1759463-1759515)
[»] chr3 (12 HSPs)
chr3 (18-188)||(38028732-38028902)
chr3 (25-184)||(55084797-55084956)
chr3 (18-188)||(38040047-38040217)
chr3 (18-188)||(38036759-38036929)
chr3 (25-154)||(38043914-38044043)
chr3 (25-184)||(38024845-38025004)
chr3 (25-184)||(38031297-38031456)
chr3 (18-154)||(50904792-50904928)
chr3 (25-131)||(38033802-38033908)
chr3 (25-154)||(50911869-50911998)
chr3 (18-154)||(48840712-48840847)
chr3 (25-154)||(50909971-50910100)
[»] chr8 (2 HSPs)
chr8 (22-188)||(21604720-21604886)
chr8 (25-184)||(21607266-21607425)
[»] chr2 (1 HSPs)
chr2 (18-154)||(3073573-3073709)


Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 18 - 583
Target Start/End: Complemental strand, 27523539 - 27522971
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27523539 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacttcattccaagaattgttgagcgaagccgaggaacaatttgaa 27523440  T
Q  118 tatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaattagctctttgaagatatcgt 217  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27523439 tatgaccatccaatgggtggtctaactattccttgcaaagaagacattttcttagatattacttctcacttgaattgaattagctctttgaagatatcat 27523340  T
Q  218 aggacatgaca--gatatttgacccatttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgttgtcatatttgcttgtaaatatg 315  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27523339 aggacatgacatagatatttgacccagttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgttatcatatttgcttgtaaatatg 27523240  T
Q  316 ttcacctcaatgagaagtttattaacacattattactgtgtttttcttacataccattctaagaatcgatgcatctatatttgttaaatgttcagtttag 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27523239 ttcacctcaatgagaagtttattaacacattattactgtgtttttcttacatgccattctaagaatcgatgcatctatatttgttaaatgttcagtttag 27523140  T
Q  416 aatctctagaggatataatagaagattcatttgttcaattataaaatcaatcctcccctaatgcaaaaaatgg-aatttaaaagtaaactatattgattt 514  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  27523139 aatctctagaggatataatggaagattcagttgttcaattataaaatcaatcctcccctaatgcaaaaaatggaaattaaaaagtaaactatattgattt 27523040  T
Q  515 aacaataataattgaagtatatattgcgnnnnnnncatctgcagagaacacataattattggatagaat 583  Q
    ||||||||||||||||||||||||||||        |||||||||||||||| ||||||||||||||||    
T  27523039 aacaataataattgaagtatatattgcggaaaaaatatctgcagagaacacagaattattggatagaat 27522971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 27505838 - 27505513
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| |||||||||||||||    
T  27505838 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgaaccaagctgaggaacaatttgaa 27505739  T
Q  118 tatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaattagctctttgaagatatcgt 217  Q
    ||||||||||||||||||||||| |||||||||||||  ||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| |    
T  27505738 tatgaccatccaatgggtggtctcactattccttgcagagaagagattttcttagatatcatttctcacttgaattgaattagctctttgaagatatcat 27505639  T
Q  218 aggac--atgacagatatttgacccatttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgttgtcatatttgcttgtaaatatg 315  Q
     ||||  |||  ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||| ||||||| |||    
T  27505638 tggactaatg-tagatatttgacccatttttgtagcagtttagtttctcacattcaaaagatttaatcttttgttgttatcatacttggttgtaaaaatg 27505540  T
Q  316 ttcacctcaatgagaagtttattaaca 342  Q
    |||| ||||||||||| ||||||||||    
T  27505539 ttcatctcaatgagaaatttattaaca 27505513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 27479906 - 27480231
Alignment:
Q  19 tacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaat 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| | ||||||| | |||| ||||||||||||||||    
T  27479906 tacgtaggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatcattccaaaagttgttgaaccaagctgaggaacaatttgaat 27480005  T
Q  119 atgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaattagctctttgaagatatcgta 218  Q
    |||| ||||||||||||||||| || ||||||||||  |||||||||||||||||||||| |||||||||||||||||||| || |||||||||||| ||    
T  27480006 atgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttagatattaattctcacttgaattgaattacctttttgaagatatcata 27480105  T
Q  219 ggacatgac--agatatttgaccca-tttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgttgtcatatttgcttgtaaatatg 315  Q
    |||| ||||  || ||||||| ||| ||||||||| ||||||||||||||| ||||||| |||| ||||||||||||| ||||| ||| ||||||| |||    
T  27480106 ggac-tgacgtagttatttgatccattttttgtagtagtttagtttctcacgttcaaaatatttaatcttttgttgttatcatacttggttgtaaaaatg 27480204  T
Q  316 ttcacctcaatgagaagtttattaaca 342  Q
    |||| ||||||||||| ||||||||||    
T  27480205 ttcatctcaatgagaaatttattaaca 27480231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 27486987 - 27487315
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaa 117  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||| || |||||| | || || ||||||||||||| | |||| || ||||||||||||    
T  27486987 gtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaaccaagctgaagaacaatttgaa 27487086  T
Q  118 tatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattga---attagctctttgaagatat 214  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||   ||||| |||||||||||||    
T  27487087 tatgatcatccaatgggtggtcttactattccttgcaaagaagacattttcttagatattacttctcacttgaattgaattattagttctttgaagatat 27487186  T
Q  215 cgtaggacatgac--agatatttgaccca-tttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgttgtcatatttgcttgtaaa 311  Q
    | |||||| ||||  |||||| ||||||| |||||||||||||||   |||||||||||||||||||| ||||||||||||| ||||| ||| |||||||    
T  27487187 cataggac-tgacgtagatatctgacccattttttgtagcagttt-tattctcaccttcaaaagatttaatcttttgttgttatcatacttggttgtaaa 27487284  T
Q  312 tatgttcacctcaatgagaagtttattaaca 342  Q
     ||||||| ||||||||||| ||||||||||    
T  27487285 aatgttcatctcaatgagaaatttattaaca 27487315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 27469464 - 27469739
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaa 117  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||| |||||| |||||||| |||| || ||||||||||||    
T  27469464 gtacgtaggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaaacatcattacaagaactgttgagccaagctgaagaacaatttgaa 27469563  T
Q  118 tatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaattagctctttgaagatatcgt 217  Q
    ||||| |||||||||||||||||||||||||||||||  ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||| |    
T  27469564 tatgaacatccaatgggtggtctaactattccttgcagagaagaaattttcttagatatcacctctcacttcaattgaattagctctttgaagatatcat 27469663  T
Q  218 aggacatgac--agatatttgacccatttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgt 292  Q
    ||||| ||||  |||||| |||||||||||||||||| |||||||||  ||||||||||||||||  ||||||||||    
T  27469664 aggac-tgacgtagatatctgacccatttttgtagcactttagtttcataccttcaaaagattttcacttttgttgt 27469739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 25 - 337
Target Start/End: Complemental strand, 27526241 - 27525929
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |    
T  27526241 ggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagccaagctgaggaacaatttgaatatgatc 27526142  T
Q  125 atccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaattagctctttgaagatatcgtaggacat 224  Q
    |||||| ||||||||| |||||||||||||  |||||| |||||||||| || |||||||  |||||||||||| |||||  ||||||| | || ||  |    
T  27526141 atccaacgggtggtctcactattccttgcagagaagacgttttcttagagatcacttctcgtttgaattgaattggctctcggaagataccataaga-tt 27526043  T
Q  225 gac--agatatttgacccatttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgttgtcatatttgcttgtaaatatgttcacct 322  Q
    |||  |||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| | ||| ||| || | || | ||||||||    
T  27526042 gacgtagatatttgacccatttttgtagcagtttagtttctcacctttagaaga-tttatcttttgttgttatgatacttgtttatgaaaaagttcacct 27525944  T
Q  323 caatgagaagtttat 337  Q
    ||||||||| |||||    
T  27525943 caatgagaaatttat 27525929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 28 - 222
Target Start/End: Original strand, 27476701 - 27476895
Alignment:
Q  28 gagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatc 127  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||| ||   |||||||||||||||||||| ||||    
T  27476701 gagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagccaaagtgaggaacaatttgaatatgatcatc 27476800  T
Q  128 caatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaattagctctttgaagatatcgtaggac 222  Q
    |||||||||||||||||||||||||||  |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||    
T  27476801 caatgggtggtctaactattccttgcagagaagacattttcttggatattacctctcacttaaattgaattagctctttgaagatatcataggac 27476895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 27460482 - 27460801
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaa 117  Q
    |||| |||||||| | |||||| | |||||||| ||| ||||||||||||| ||||  ||||||||||||||| ||||| ||   |||||||||||||||    
T  27460482 gtacataggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaacaatttgaa 27460581  T
Q  118 tatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaattagctctttgaagatatcgt 217  Q
    ||||| ||||||||||||||||| || ||||||||||  |||||||||||||| ||||| || |||||||| | |||||||||||||||||||||||| |    
T  27460582 tatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaattagctctttgaagatatcat 27460681  T
Q  218 aggacatgac--agatatttgacccatttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgttgtcatatttgcttgtaaatatg 315  Q
    ||||| ||||  || ||||||||||| |||||||||||||||||||||  |||||| |||| || ||||||||||||| |||||     ||||||| |||    
T  27460682 aggac-tgacgtagttatttgaccca-ttttgtagcagtttagtttctatccttcagaaga-ttaatcttttgttgttatcata----gttgtaaaaatg 27460774  T
Q  316 ttcacctcaatgagaagtttattaaca 342  Q
    |||| ||||||||||| ||||||||||    
T  27460775 ttcatctcaatgagaaatttattaaca 27460801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 79 - 276
Target Start/End: Complemental strand, 27502210 - 27502011
Alignment:
Q  79 ttccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatatta 178  Q
    |||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||| |    
T  27502210 ttccaagaattgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttagatatca 27502111  T
Q  179 cttctcacttgaattgaattagctctttgaagatatcgtaggacatgac--agatatttgaccca-tttttgtagcagtttagtttctcaccttcaaaag 275  Q
    | |||||||| |||||||||||||||||||||||||| |||||| ||||  ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  27502110 cctctcacttaaattgaattagctctttgaagatatcataggac-tgacgtagatatttgacacattttttgtagcagtttagtttctcaccttcaaaag 27502012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 22 - 288
Target Start/End: Complemental strand, 27513908 - 27513641
Alignment:
Q  22 gtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatg 121  Q
    ||||||||||||||||||||||||||||| ||  ||||||| |||||||||||||| |||||||||||||||| | |||| || ||||||| ||||||||    
T  27513908 gtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaaccaagctgaagaacaatatgaatatg 27513809  T
Q  122 accatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaattagctctttgaagatatcgtagga 221  Q
    | ||||||||||||||||| |||||||||||||  |||||  | ||||||||||| ||||||| |||||||||||| |  ||||||||| || | ||| |    
T  27513808 atcatccaatgggtggtctcactattccttgcagagaagaagtattcttagatatcacttctcgcttgaattgaatcaaatctttgaagttagcatagta 27513709  T
Q  222 catgac--agatatttgacccatttttgtagcagtttagtttctcaccttcaaaagattttatcttttg 288  Q
      ||||  |||||||||||||| |||||||| ||| |||||||||||||| |||||| ||| |||||||    
T  27513708 -ttgacgtagatatttgacccaattttgtagtagtatagtttctcaccttgaaaagagtttctcttttg 27513641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 27516729 - 27516560
Alignment:
Q  34 atgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaatgg 133  Q
    |||||| | |||||||| ||| ||||||||||||| ||||  ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||    
T  27516729 atgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatgg 27516630  T
Q  134 gtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaattagctc 203  Q
    | ||||| |||||||||||||| |||||  ||||||||||||| |||||| |||||||||||| ||||||    
T  27516629 ggggtctcactattccttgcaaagaagaagttttcttagatatcacttctaacttgaattgaagtagctc 27516560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 27473896 - 27474165
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaa 117  Q
    ||||||||||||| | |||||| | |||||||| ||| ||||||||||||| ||||  ||||||||||||||| ||||| ||   |||||||||||||||    
T  27473896 gtacgtaggagaggagatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaacaatttgaa 27473995  T
Q  118 tatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaattagctctttgaagatatcgt 217  Q
    ||||| ||||||||||||||||| || |||||||||   |||||| |||||||||| || ||||||| ||||||             |||||||||||      
T  27473996 tatgatcatccaatgggtggtctcaccattccttgcggagaagacgttttcttagacatcacttctcgcttgaa-------------ttgaagatatcaa 27474082  T
Q  218 aggacatgac--agatatttgacccatttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgttgtcata 299  Q
    | ||| ||||  |||||||||||| |||||||||||| |||||||||| ||||||||||||||||  ||||||||||| |||||    
T  27474083 aagac-tgacatagatatttgaccaatttttgtagcactttagtttctaaccttcaaaagattttcacttttgttgttatcata 27474165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 27498426 - 27498585
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    |||||| ||||||| || |||||||| ||| ||||||| ||||||||| | || |||||||| ||||||| | |||||||||||||||| |||||||| |    
T  27498426 ggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaaccaagccgaggaacaattcgaatatgatc 27498525  T
Q  125 atccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctc 184  Q
    |||||||||||||||| ||||||||||||   |||||||| ||||||||||| |||||||    
T  27498526 atccaatgggtggtctcactattccttgcggagaagacatgttcttagatatcacttctc 27498585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 27444929 - 27444764
Alignment:
Q  19 tacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaat 118  Q
    ||||| |||||| |||||||| |||||||||| ||  ||||||| |||| |||| | ||||| |||||||| ||||   |||||||||||||||| | ||    
T  27444929 tacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggat 27444830  T
Q  119 atgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctc 184  Q
    |||||||||||||||||||||| || ||||||||||  |||||| |||||||||||||||||||||    
T  27444829 atgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 27444764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 27502939 - 27502771
Alignment:
Q  22 gtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatg 121  Q
    ||||||||||| ||||||||||||||||||||  | ||||||||||| ||||| ||||| ||||| ||| ||||| |||| | |||| |||||| |||||    
T  27502939 gtaggagagaagatgaagcggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatg 27502840  T
Q  122 accatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttga 190  Q
    ||||||||||||||||||| |||||||||||  | |||||  ||||| ||||||| ||||||| |||||    
T  27502839 accatccaatgggtggtcttactattccttgtgaagaagattttttcgtagatatcacttctcgcttga 27502771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 27500474 - 27500295
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaa 117  Q
    |||||||||||||||||||||||| |||||||| ||| ||||||| || |||||||  ||||||||||||||| ||||| || | || ||||| || | |    
T  27500474 gtacgtaggagagaaaatgaagcgatttgtgatccctatatcatacttaaaccaaagttcattccaagaattgctgagccaatctgaagaacagttcgga 27500375  T
Q  118 tatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaat 197  Q
    ||||||||||||||||||||  | |||||||||||||  |||||| ||||||||||  | ||||||  ||||||||||||    
T  27500374 tatgaccatccaatgggtggcatcactattccttgcagagaagaccttttcttagaattcacttcttgcttgaattgaat 27500295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 27466825 - 27467011
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaa 117  Q
    |||||||||| || | |||||| | |||||||| ||| ||||||||||||| ||||  | |||||||||| || ||||| ||   |||||||||||||||    
T  27466825 gtacgtaggaaaggagatgaagagatttgtgatccctatatcatatttgaagcaaaaattattccaagaactgctgagccaaagtgaggaacaatttgaa 27466924  T
Q  118 tatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaattagctct 204  Q
    ||||| ||||||||||||||||| |||||||||||||  |||||  |||||||||| || ||||||  ||||||||||| |||||||    
T  27466925 tatgatcatccaatgggtggtctcactattccttgcagagaagaagttttcttagacatcacttctagcttgaattgaagtagctct 27467011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 27431270 - 27431118
Alignment:
Q  32 aaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaat 131  Q
    |||||||| |||||||||| ||  ||||||| ||||||||| | ||||| |||||||||||||   |||||||||||||||||| ||||||||||||||     
T  27431270 aaatgaagaggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaac 27431171  T
Q  132 gggtggtctaactattccttgcaatgaagacattttcttagatattacttctc 184  Q
     |||||||| || ||||||||||  |||||| |||||||| ||||||||||||    
T  27431170 cggtggtctcacaattccttgcagagaagacgttttcttaaatattacttctc 27431118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 25 - 183
Target Start/End: Original strand, 27501328 - 27501486
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    |||||| ||||||| ||||||||||| ||  ||||||| || |||||| | |  || ||||| ||||||| | |||||||||||||||||||||| || |    
T  27501328 ggagaggaaatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttgaatacgatc 27501427  T
Q  125 atccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttct 183  Q
    |||||| ||||||||| ||||||||||| |  |||||||| ||||||||||| ||||||    
T  27501428 atccaacgggtggtctcactattccttgtagagaagacatgttcttagatatcacttct 27501486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 27557500 - 27557657
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    |||||| |||||||| |||||||||| ||  | ||||| || |||||| | ||||| ||||||||| |||   |||| |||||||||||||||||||  |    
T  27557500 ggagaggaaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttc 27557599  T
Q  125 atccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttc 182  Q
    |||||||||||||||| |||||||| ||||  |||||  ||||||||||||| |||||    
T  27557600 atccaatgggtggtctcactattccatgcagagaagatgttttcttagatatcacttc 27557657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 27507949 - 27507777
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaa 117  Q
    |||||||||||  ||||||||||||||||| |||||  | ||||||||||| ||||| ||| | ||||| ||| | ||| | || |  ||| |||||| |    
T  27507949 gtacgtaggagtaaaaatgaagcggtttgtaattccaatgtcatatttgaatcaaacttcacttcaagagttgctcagccaggctgtcgaagaatttgga 27507850  T
Q  118 tatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttga 190  Q
    ||||||||||||||||||||||| || ||||||||  | |||||  ||||||||||||| ||||||| |||||    
T  27507849 tatgaccatccaatgggtggtcttacaattccttgtgaagaagatcttttcttagatatcacttctcgcttga 27507777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 27503933 - 27504062
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    ||||||||| ||  |||||||||  ||||||||||||| ||||||||| | ||||| ||||| ||||||||  ||||||||||| | |||| |||||| |    
T  27503933 ggagagaaattggcgcggtttgtagttcctgtatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatc 27504032  T
Q  125 atccaatgggtggtctaactattccttgca 154  Q
    ||||||||||||| || || ||||||||||    
T  27504033 atccaatgggtggcctcaccattccttgca 27504062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 27414439 - 27414297
Alignment:
Q  19 tacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaat 118  Q
    ||||| ||||| |||||||  ||||||||||||||||||||||| ||||||||| ||||||| ||||||||  | |   || | || ||| |||||| ||    
T  27414439 tacgttggagataaaatgagacggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaattactaaatcaatcagaagaagaatttggat 27414340  T
Q  119 atgaccatccaatgggtggtctaactattccttgcaatgaaga 161  Q
    |||| ||||||||||||||||| || ||||| |||| ||||||    
T  27414339 atgatcatccaatgggtggtcttacaattccgtgcagtgaaga 27414297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 27475708 - 27475580
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    ||||||||| ||  |||||||||  ||||||||||||| ||||| ||| | ||||| ||||| ||||||||  ||||||||||| | |||| |||||| |    
T  27475708 ggagagaaattggcgcggtttgtagttcctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatc 27475609  T
Q  125 atccaatgggtggtctaactattccttgc 153  Q
    |||| |||||||| || || |||||||||    
T  27475608 atcccatgggtggcctcaccattccttgc 27475580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 27554393 - 27554479
Alignment:
Q  98 aagccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctc 184  Q
    |||| ||||||||||||| |||||| ||||||| |||| |||| || |||||||| |  |||||| |||||||||||||||||||||    
T  27554393 aagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttgtagagaagacgttttcttagatattacttctc 27554479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 27468456 - 27468327
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    ||||||||| ||  |||||||||  | ||||||||||| || |||||| | ||||| ||||| ||||||||  || |||||||| |||||| |||||| |    
T  27468456 ggagagaaactggtgcggtttgtagtccctgtatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatc 27468357  T
Q  125 atccaatgggtggtctaactattccttgca 154  Q
    |||| |||||||| || || ||||||||||    
T  27468356 atcccatgggtggcctcaccattccttgca 27468327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 27524535 - 27524664
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    ||||||||| ||| ||||||  |  ||||||||||||||||||||||| | ||||| ||||| |||||||   |||| |||||| | |||| |||||| |    
T  27524535 ggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatc 27524634  T
Q  125 atccaatgggtggtctaactattccttgca 154  Q
    ||||||||||||| || || ||||| ||||    
T  27524635 atccaatgggtggcctcaccattccgtgca 27524664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 27514902 - 27515029
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    ||||||||| ||  |||||||||  | ||||||||||| ||||| ||| | ||||| ||||| ||||||||  || |||||||| |||||| |||||| |    
T  27514902 ggagagaaactggtgcggtttgtagtccctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatc 27515001  T
Q  125 atccaatgggtggtctaactattccttg 152  Q
    |||| |||||||| || || ||||||||    
T  27515002 atcccatgggtggcctcaccattccttg 27515029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 27424636 - 27424514
Alignment:
Q  32 aaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaat 131  Q
    |||||| ||||||||||||||| |||||||| ||||||||| | ||||| ||||||||| | |   || | || ||| ||| || |||||| ||||||||    
T  27424636 aaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaatatggatatgatcatccaat 27424537  T
Q  132 gggtggtctaactattccttgca 154  Q
    ||||||||| || ||||| ||||    
T  27424536 gggtggtcttaccattccgtgca 27424514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 27460849 - 27460914
Alignment:
Q  400 taaatgttcagtttagaatctctagaggatataatagaagattcatttgttcaattataaaatcaa 465  Q
    ||||||||||||||||||||| || | |||||||| ||||||||| || ||||| |||||||||||    
T  27460849 taaatgttcagtttagaatctttaaatgatataatggaagattcagttattcaaatataaaatcaa 27460914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 27563456 - 27563339
Alignment:
Q  44 ttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtctaac 143  Q
    ||||||| || |||||||| ||||||||||| |  || ||||| ||| ||||  ||||||| ||| | |||| |||||| |||||||||||||| || ||    
T  27563456 ttgtgatccccgtatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcac 27563357  T
Q  144 tattccttgcaatgaaga 161  Q
     |||||||||| ||||||    
T  27563356 aattccttgcactgaaga 27563339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 17970303 - 17970439
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaa 117  Q
    |||||| |||||| ||||||||||||||||||| |||   ||||| ||||||||||| ||||| ||| | ||| ||||    || |||||| |||| | |    
T  17970303 gtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcgga 17970402  T
Q  118 tatgaccatccaatgggtggtctaactattccttgca 154  Q
    || || |||||||||||||| || || ||||||||||    
T  17970403 tacgatcatccaatgggtggcctcacaattccttgca 17970439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 40 - 195
Target Start/End: Original strand, 27567281 - 27567436
Alignment:
Q  40 cggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtc 139  Q
    ||||| |||||||| |||||||| ||||||||| | || || ||||||||  | |   || | || ||| ||||||  ||||| ||||||||||||||||    
T  27567281 cggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaatttggttatgatcatccaatgggtggtc 27567380  T
Q  140 taactattccttgcaatgaagacattttcttagatattacttctcacttgaattga 195  Q
    | || ||||||||||  |||||   |||||||||  | ||||||||||||||||||    
T  27567381 tcacaattccttgcagcgaagatgctttcttagaactcacttctcacttgaattga 27567436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 192
Target Start/End: Original strand, 27423264 - 27423400
Alignment:
Q  56 tatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaa 155  Q
    ||||||| ||||||||| | ||||| ||||||||||||||  ||||||||||| | ||||  ||  | ||||| |||||||| || ||  |||||||||     
T  27423264 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcac 27423363  T
Q  156 tgaagacattttcttagatattacttctcacttgaat 192  Q
     |||||  |||||  | |||| |||||||||||||||    
T  27423364 ggaagatgttttccaacatataacttctcacttgaat 27423400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 27508863 - 27508975
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    ||||||||| ||| ||| |||||  ||||||| ||||||||||||||| | ||||| ||||| |||||||   | || |||||| | |||| |||||| |    
T  27508863 ggagagaaactgacgcgttttgtcgttcctgtgtcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatc 27508962  T
Q  125 atccaatgggtgg 137  Q
    |||||| ||||||    
T  27508963 atccaacgggtgg 27508975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 154
Target Start/End: Original strand, 27585717 - 27585828
Alignment:
Q  43 tttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtctaa 142  Q
    |||||||| || |||||||| ||||||||| | |  || ||||| ||| ||||  ||||||| ||| | |||| |||||| ||||||||||| ||||| |    
T  27585717 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctca 27585816  T
Q  143 ctattccttgca 154  Q
    | ||||||||||    
T  27585817 ccattccttgca 27585828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 27412690 - 27412804
Alignment:
Q  40 cggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtc 139  Q
    ||||||||||| ||  ||||||| ||||||||| | | ||| ||||| || |||||  |||| || ||| | |||| |||||| |||||||||||||| |    
T  27412690 cggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggcc 27412789  T
Q  140 taactattccttgca 154  Q
    | || ||||||||||    
T  27412790 tcaccattccttgca 27412804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 27559282 - 27559233
Alignment:
Q  112 tttgaatatgaccatccaatgggtggtctaactattccttgcaatgaaga 161  Q
    |||| |||||| ||||||||||||||||| || |||||||||| ||||||    
T  27559282 tttggatatgatcatccaatgggtggtctcacaattccttgcagtgaaga 27559233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 3e-59; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 1759252 - 1759453
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagc----gaagccgaggaacaatt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||     |||| |||||||||||    
T  1759252 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaagcaagctgaggaacaatt 1759351  T
Q  114 tgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaattagctctttgaagata 213  Q
    ||||||  ||||||||||||||||||| || |||| |||||  |||||  ||||||||||||| |||||||||||||||||||| |||||| |||| |||    
T  1759352 tgaatacaaccatccaatgggtggtctcaccattctttgcagagaagaagttttcttagatatcacttctcacttgaattgaatcagctctctgaaaata 1759451  T
Q  214 tc 215  Q
    ||    
T  1759452 tc 1759453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 32 - 190
Target Start/End: Complemental strand, 1754363 - 1754206
Alignment:
Q  32 aaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaat 131  Q
    ||||||||||||||||||| || |||||||| ||||||||| | ||||| ||| ||||| | | | || | |||||||| ||||||||||| ||||| ||    
T  1754363 aaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaaatctgaggaacagtttgaatatgatcatccgat 1754264  T
Q  132 gggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttga 190  Q
    ||||||||| ||||||||||| |  ||| || ||||||||||||| ||||||| |||||    
T  1754263 gggtggtctcactattccttgtagagaa-accttttcttagatatcacttctcgcttga 1754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 1756886 - 1756757
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    |||||||||  ||||||||||||||| ||  ||||||| ||||||||| | || || ||| | ||||||||  |||| || ||| |||||| |||||| |    
T  1756886 ggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtcaagctgaagaagaatttggatatgatc 1756787  T
Q  125 atccaatgggtggtctaactattccttgca 154  Q
    | || |||||||| || || ||||||||||    
T  1756786 accccatgggtggcctcaccattccttgca 1756757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 1759463 - 1759515
Alignment:
Q  241 atttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgtt 293  Q
    |||||||||| | |||||||||| ||||||||||||||||  ||||| |||||    
T  1759463 atttttgtagaactttagtttcttaccttcaaaagatttttacttttcttgtt 1759515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 38028902 - 38028732
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaa 117  Q
    |||||| |||||| |||||||||| ||||| || ||    ||||| ||||||||| | ||||| ||| |  |||||||  ||||||||||| |||||| |    
T  38028902 gtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaatttgga 38028803  T
Q  118 tatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcactt 188  Q
    ||||||||||||||||| || || || ||||||||||  |||||| |||||||  ||||||||||||||||    
T  38028802 tatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 38028732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 55084797 - 55084956
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    |||||||||||||||||||||||||| ||| | || || ||||||||| | ||||| ||||| ||||||||    || |||||| |||||| ||| || |    
T  55084797 ggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtcgggcggaggaagaatttggatacgatc 55084896  T
Q  125 atccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctc 184  Q
    ||||||||||||| || || ||||||||||  |||||  |||||||  ||||||||||||    
T  55084897 atccaatgggtggcctcacaattccttgcacagaagatgttttctttcatattacttctc 55084956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 38040217 - 38040047
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaa 117  Q
    |||||| |||||| |||||||||| ||||| || ||    ||||| ||||||||| | ||||| ||| |  |||||||  ||||||||||| |||| | |    
T  38040217 gtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaattcgga 38040118  T
Q  118 tatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcactt 188  Q
    ||||||||||||||||| || || || ||||||||||  |||||| |||||||  ||||||||||||||||    
T  38040117 tatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 38040047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 38036929 - 38036759
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaa 117  Q
    |||||| |||||| ||||||| ||||||||  | ||  |  |||| ||||||||| | ||||| ||| | ||||||||  ||||||||||| |||| | |    
T  38036929 gtacgttggagagcaaatgaaacggtttgttgtccccatgccatacttgaaccaagcttcatttcaaaatttgttgagtcaagccgaggaagaattcgga 38036830  T
Q  118 tatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcactt 188  Q
    ||||||||||||||||| || || || ||||||||||  ||| || |||||||  ||||||||||||||||    
T  38036829 tatgaccatccaatgggcggcctcacaattccttgcacagaatacgttttcttgcatattacttctcactt 38036759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 38043914 - 38044043
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    |||||| ||||||||||||||||||| ||| | ||||| ||||| ||||| || || ||||| ||| ||||  |||| |||||| |||||| |||||| |    
T  38043914 ggagaggaaatgaagcggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatc 38044013  T
Q  125 atccaatgggtggtctaactattccttgca 154  Q
    |||||||||| || || || ||||||||||    
T  38044014 atccaatgggcggcctcacaattccttgca 38044043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 38025004 - 38024845
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    |||||| |||||||||||||||| || ||  | ||||| ||||||||| | || || ||| | || |||||  |||| |||||| |||||| |||||| |    
T  38025004 ggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatc 38024905  T
Q  125 atccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctc 184  Q
    | ||||||||||| || || ||||||||||  |||||||||||| | || ||||||||||    
T  38024904 acccaatgggtggcctcacgattccttgcacagaagacattttcatggaaattacttctc 38024845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 38031456 - 38031297
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    |||||| |||||||||||||||| || ||  | ||||| ||||||||| | || || ||| | || |||||  |||| |||||| |||||| |||||| |    
T  38031456 ggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatc 38031357  T
Q  125 atccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctc 184  Q
    | ||||||||||| || || ||||||||||  |||||||||||| | || ||||||||||    
T  38031356 acccaatgggtggcctcacgattccttgcacagaagacattttcatggaaattacttctc 38031297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 50904928 - 50904792
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaa 117  Q
    |||||| |||||  ||||||||||||||||||| | | | || || ||||||||||| ||||| ||||| ||||||||   ||| |||||  |||| | |    
T  50904928 gtacgttggagaagaaatgaagcggtttgtgatccatatgtcctacttgaaccaaacttcatttcaagacttgttgagtcgagcagaggatgaattcgga 50904829  T
Q  118 tatgaccatccaatgggtggtctaactattccttgca 154  Q
    ||||| |||||||||||||| || || ||||||||||    
T  50904828 tatgatcatccaatgggtggcctcaccattccttgca 50904792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 38033908 - 38033802
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    |||||| |||||||||||||||| || ||    ||||| ||||||||| | ||||| ||| | ||||||||  ||||||||||| |||||| ||||||||    
T  38033908 ggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaatttggatatgacc 38033809  T
Q  125 atccaat 131  Q
    |||||||    
T  38033808 atccaat 38033802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 50911998 - 50911869
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    ||||| || ||||| ||||||||||| ||    ||||| ||||||||| | ||||| ||| | ||||||||  |||| |||||| |||||| |||||| |    
T  50911998 ggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagcagaggaagaatttggatatgatc 50911899  T
Q  125 atccaatgggtggtctaactattccttgca 154  Q
    | ||||||||||| ||||| ||||||||||    
T  50911898 acccaatgggtggcctaacaattccttgca 50911869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 48840847 - 48840712
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaa 117  Q
    |||||| |||||| | |||||||| ||||| || ||  |  |||| ||||||||| ||||||| ||||| ||||||||  |||  ||| || |||||| |    
T  48840847 gtacgtcggagaggagatgaagcgatttgtaatccccatgccatacttgaaccaagcctcatttcaagacttgttgagt-aagtggagaaagaatttgga 48840749  T
Q  118 tatgaccatccaatgggtggtctaactattccttgca 154  Q
    ||||| |||||||||||||| || || ||||||||||    
T  48840748 tatgatcatccaatgggtggcctcacaattccttgca 48840712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 50909971 - 50910100
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    |||||| |||||  ||||||||| || ||  | ||||| ||||||||| | ||||| ||| | |||||||   |||  |||||| |||||| |||||| |    
T  50909971 ggagagcaaatgctgcggtttgttatccccatgtcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatc 50910070  T
Q  125 atccaatgggtggtctaactattccttgca 154  Q
    ||||||||||||| || || ||||||||||    
T  50910071 atccaatgggtggcctcacaattccttgca 50910100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 21604886 - 21604720
Alignment:
Q  22 gtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatg 121  Q
    ||||||||| |||||||||| ||||| || ||    ||||| ||||||||| | ||||| ||| |  |||||||  ||| ||||||| |||| | |||||    
T  21604886 gtaggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacatgttgagtcaagacgaggaagaattaggatatg 21604787  T
Q  122 accatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcactt 188  Q
    ||||||||||||| || || || ||||||||||  |||||| |||||||  ||||||||||||||||    
T  21604786 accatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 21604720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 21607425 - 21607266
Alignment:
Q  25 ggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgacc 124  Q
    |||||| |||||||||||||||| || ||  | ||||| ||||||| | | || || ||| | || |||||  |||| |||||| |||||| |||||| |    
T  21607425 ggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccgagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatc 21607326  T
Q  125 atccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctc 184  Q
    | ||||||||||| || ||  |||||||||  ||||| |||||| | || ||||||||||    
T  21607325 acccaatgggtggcctcacggttccttgcacagaagatattttcatggaaattacttctc 21607266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 3073573 - 3073709
Alignment:
Q  18 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaa 117  Q
    |||||| |||||| ||||||||||||||||||| |||   ||||| ||||||||||| ||||| ||| | ||| ||||    || |||||| |||| | |    
T  3073573 gtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcgga 3073672  T
Q  118 tatgaccatccaatgggtggtctaactattccttgca 154  Q
    || || |||||||||||||| || || ||||||||||    
T  3073673 tacgatcatccaatgggtggcctcacaattccttgca 3073709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University