View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_low_10 (Length: 549)
Name: NF17034_low_10
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 5 - 542
Target Start/End: Original strand, 42654594 - 42655131
Alignment:
| Q |
5 |
tgtccaagaatatgaaacaagtactattctcattcatccattaacctaagatgaaccgtttgaggtgtcaaaacttttctttctaaccaagagacaagtg |
104 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42654594 |
tgtccaacaatatgaaacaagtactattctcattcatccattaacctaagatgaaccgtttgaggtgtcaaaacttttctttctaaccaagagacaagtg |
42654693 |
T |
|
| Q |
105 |
atttttgaaggattggaatttgtgttatcaagacaacatactaagaaatcaggcctatgaagtccaacatgtagcctatcctttcccacaaccattgcag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42654694 |
atttttgaaggattggaatttgtgttatcaagacaacatactaagaaatcaggcctatgaagtccaacatgtagcctatcctttcccacaaccattgcag |
42654793 |
T |
|
| Q |
205 |
atgcatcaagcaaaacatgccaatagttcctatgagcctcagaaacccaatgcattgtcccattcacatctgccacataagcaaatagcccttttggact |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42654794 |
atgcatcaagcaaaacatgccaatagttcctatgagcctcagaaacccaatgcattgtcccattcacatctgccacataagcaaatagcccttttggact |
42654893 |
T |
|
| Q |
305 |
aatcttacatttcctcctaaaattttgacttaactgagaccctctaatcctcaaatcaagccatgtcttaggtgctatgagaaccctggattccttaaaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42654894 |
aatcttacatttcctcctaaaattttgacttaactgagaccctctaatcctcaaatcaagccatgtcttaggtgctatgagaaccctggattccttaaaa |
42654993 |
T |
|
| Q |
405 |
gaagcaaattctttgatataatcctcttgttgttcaccaagaatagtcatgtagtaatttcccttaacaaaaggataactttctcccaccaacatcatag |
504 |
Q |
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| T |
42654994 |
gaagcaaattctttgatataatcctcttgttgttcaccaagaatagtcatgtagtaatttcccttaacaaaaggataactttctcccaccaacatcatag |
42655093 |
T |
|
| Q |
505 |
catccttgtaacttggagtgaaaagaaccaaatactca |
542 |
Q |
| |
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| T |
42655094 |
catccttgtaacttggagtgaaaagaaccaaatactca |
42655131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 67 - 542
Target Start/End: Complemental strand, 43053322 - 43052853
Alignment:
| Q |
67 |
aggtgtcaaaacttttctttctaaccaagagacaagtgatttttgaaggattggaatttgtgttatcaagacaacatactaagaaatcaggcctatgaag |
166 |
Q |
| |
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|||||||||||||||||||||| | ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43053322 |
aggtgtcaaaacttttctttctgatcaatagacaagtgattcttgaaggattggaatttgtgttatcaagacaacaaactaagaaatcaggcctatgaag |
43053223 |
T |
|
| Q |
167 |
tccaacatgtagcctatcctttcccacaaccattgcagatgcatcaagcaaaacatgccaatagttcctatgagcctcagaaacccaatgcattgtccca |
266 |
Q |
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| T |
43053222 |
tccaacatgtagcctatcctttcccacaaccattgcagatgcatcaagcaaaacatgccaatagttcctacgagcctcagaaatccaatgcattttccca |
43053123 |
T |
|
| Q |
267 |
ttcacatctgccacataagcaaatagcccttttggactaatcttacatttcctcctaaaattttgacttaactgagaccctctaatcctcaaatcaagcc |
366 |
Q |
| |
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||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
43053122 |
ttcacatctgcttcataagcaaataaaccttttggactaatcttacat---ctcctaaaattttgacttagctgagaccctctaatccttaaatcaagcc |
43053026 |
T |
|
| Q |
367 |
atgtcttaggtgctatgagaaccctggattccttaaaagaagcaaattctttgatataatcctcttgttgttcaccaagaatagtcatgtagtaatttcc |
466 |
Q |
| |
|
||||||| |||||| || |||| | || | |||| || ||||||||||||| ||||||||||| |||||||||||| ||||||||| |||| ||||| |
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| T |
43053025 |
atgtctttggtgctgggataaccttagacttcttataaaaagcaaattctttaatataatcctc---ttgttcaccaagtatagtcatgcagtagtttcc |
43052929 |
T |
|
| Q |
467 |
cttaacaaaaggataactttctcccaccaacatcatagcatccttgtaacttggagtgaaaagaaccaaatactca |
542 |
Q |
| |
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||||||||||| |||||||| || ||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |
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| T |
43052928 |
tttaacaaaagggtaactttcccctaccaacatcatagtatctttgtaacttggagtgaacagaaccaaatactca |
43052853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 201 - 532
Target Start/End: Original strand, 45479008 - 45479336
Alignment:
| Q |
201 |
gcagatgcatcaagcaaaacatgccaatagttcctatgagcctcagaaacccaatgcattgtcccattcacatctgccacataagcaaatagcccttttg |
300 |
Q |
| |
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|||||||||||||||| |||||||||| |||||| |||||||| || | |||||||||||| ||| | ||||||| ||||| |||| ||||||| |
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| T |
45479008 |
gcagatgcatcaagcagcacatgccaattgttcctgtgagcctctgagatccaatgcattgttccactagcatctgctggataagagaataagccttttg |
45479107 |
T |
|
| Q |
301 |
gactaatcttacatttcctcctaaaattttgacttaactgagaccctctaatcctcaaatcaagccatgtcttaggtgctatgagaaccctggattcctt |
400 |
Q |
| |
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|||| || ||||| |||||||||| ||||||||||||||||||||| |||||||||| || | ||| ||||| ||||| || ||| | || ||||| |
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| T |
45479108 |
gactgattttacacctcctcctaaagttttgacttaactgagaccctttaatcctcaagtccaaccaagtctttggtgcagggattacctttgactcctt |
45479207 |
T |
|
| Q |
401 |
aaaagaagcaaattctttgatataatcctcttgttgttcaccaagaatagtcatgtagtaatttcccttaacaaaaggataactttctcccaccaacatc |
500 |
Q |
| |
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|||| |||||||||| || ||| |||| |||| ||| | ||||||| ||||||||||| ||||| |||| |||||| ||||||||||| ||||||||| |
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| T |
45479208 |
aaaacaagcaaattcctttataaaatcttcttcttg---atcaagaatggtcatgtagtagtttcctttaataaaagggtaactttctcctaccaacatc |
45479304 |
T |
|
| Q |
501 |
atagcatccttgtaacttggagtgaaaagaac |
532 |
Q |
| |
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|||||||||||||| ||||||||||| ||||| |
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|
| T |
45479305 |
atagcatccttgtagcttggagtgaagagaac |
45479336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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