View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_low_12 (Length: 511)
Name: NF17034_low_12
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 495
Target Start/End: Original strand, 8139284 - 8139798
Alignment:
| Q |
7 |
tagataattctaatttggagtgtgattatataagtattttttcatcatttaattcttcaccggcaattggagaactcattaaacattttcatgagatgtt |
106 |
Q |
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| T |
8139284 |
tagataattttaatttggagtgtgattatataagtattttttcatcatttaattcttcaccgacaattggagaactcattaaacattttcatgagatgtt |
8139383 |
T |
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| Q |
107 |
ttcaaatctcctagcaaggcacctgctgaatctgttcgatcattattattagcatccattattggccattgctcctgggtatttatttcttcaacaaaac |
206 |
Q |
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| T |
8139384 |
ttcaaatctactagcaaggcacctgctgaatctgttcgatcattattattagcatccattattgaccattgctcctgggtatttatttcttcaacaaaac |
8139483 |
T |
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| Q |
207 |
cattatcatatcaattgaaagccaacaacctattgtacgaatttgttaaaagagcaatggtatagtggcacgacactatgcacccacacgaca-tataca |
305 |
Q |
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| T |
8139484 |
cattatcatatcaattgaaagccaacaacctattgtacgaatttgtgaaaagagcaatggtatagtggcacgacactatgcacccacacgacactatgca |
8139583 |
T |
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| Q |
306 |
tatatacgagtgggtcactattatgagtgggtctttttgtttttgtccaa---aacattttagcatcttgttaaaatagacattcataaaaaataagtgg |
402 |
Q |
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| T |
8139584 |
tatatacgagtgggtcactattatgagtgggtctttttgtttttgtccaaatcaaaaatggtgcatcttgttaaaatagacattcat-aaaaataagtgg |
8139682 |
T |
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| Q |
403 |
atctattgt---------------------taaatgagaggatattttataatgagagatgagagggttaaata---accctcggatgaattagatggtt |
478 |
Q |
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| T |
8139683 |
atctattgtgataaagtcttatatatgtagtaaatgagaggatattttataatgagagatgagagggttaaataaagacccttggat-aattagatggtt |
8139781 |
T |
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| Q |
479 |
gggattaaatgagagat |
495 |
Q |
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| T |
8139782 |
gggattaaatgagagat |
8139798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 446
Target Start/End: Complemental strand, 23818306 - 23818276
Alignment:
| Q |
416 |
tgagaggatattttataatgagagatgagag |
446 |
Q |
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| T |
23818306 |
tgagaggatattttataatgagagatgagag |
23818276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 456
Target Start/End: Complemental strand, 20519044 - 20518999
Alignment:
| Q |
411 |
ttaaatgagaggatattttataatgagagatgagagggttaaataa |
456 |
Q |
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| T |
20519044 |
ttaaataagaggagattttataatgagaggtgagagggtgaaataa |
20518999 |
T |
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