View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17034_low_13 (Length: 505)
Name: NF17034_low_13
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 23939112 - 23939537
Alignment:
| Q |
1 |
ttctgagtccagtttccaccaaattataaagcttatctgataatattggttccacattgtatttgttagccatttctccatacctgagattaatgtgcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23939112 |
ttctgagtccagtttccaccaaattataaagcttatctgataatattggttccacattgtatttgttagccatttctccatacctgagataaatgtgcag |
23939211 |
T |
|
| Q |
101 |
aatatatcaaatgaaaagacagaatatatgtaaggtctaaccagaaatgaccttgtatagttaaataccgcttgttattcttgcgattgaagtgaaacga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23939212 |
aatatatcaaatgaaaagacagaatatatgtattgtctaaccagaaatgaccttgtatagttaaataccgcttgttattcttgcgattgaagtgaaacga |
23939311 |
T |
|
| Q |
201 |
tactcgatcaaaacctcagttgcctacgaaaattttagtagtaaaccatcaagcataacttgactgttaaaataatgtagagcttttgaaccatagaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23939312 |
tactcgatcaaaacctcagttgcctacgaaaattttagtagtaaaccatcaagcataacttgaatgttaaaataatgtagagcttttgaaccatagaaat |
23939411 |
T |
|
| Q |
301 |
acacatataatagaagaactagtgtgagttattgaacannnnnnnaaccacttacatctgcacacaagggaggcaacagataaaccacagcatcattctc |
400 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||| |
|
|
| T |
23939412 |
acacacataatagaagaactagtgcgagttattgaacgtttttttaaccacttacatctgcacacaaggcaggaaacggataaaccacaacatcattctc |
23939511 |
T |
|
| Q |
401 |
tgttacaatgctttttggtgtcggaa |
426 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
23939512 |
tgttacaatgctttttggtgttggaa |
23939537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 83 - 234
Target Start/End: Original strand, 24003378 - 24003529
Alignment:
| Q |
83 |
cctgagattaatgtgcagaatatatcaaatgaaaagaca--gaatatatgtaaggtctaaccagaaatgaccttgtatagttaaataccgcttgttattc |
180 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| | ||| ||||||||||| |||||||| |||||||||||| || ||||| ||| | ||| |||| |
|
|
| T |
24003378 |
cctgagattaatgtgcagaacataccaaatgaacaaacaaagaatatatgtattgtctaacctgaaatgaccttgcattgttaa-tacagtttgaaattc |
24003476 |
T |
|
| Q |
181 |
ttgcgattgaagtgaaacgatactcgatcaaaacctcagttgcctacgaaaatt |
234 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24003477 |
ttgcgattgaagtgaaacgatactcg-tcaaaacctcagttgcctacgaaaatt |
24003529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 24003638 - 24003733
Alignment:
| Q |
242 |
taaaccatcaagcataacttgactgttaaaataatgtagagcttttgaaccatagaaatacacatataatagaagaactagtgtgagttattgaac |
337 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||| ||||||||||||| | | ||| |||| |||| ||||||| |||||||||||||||||| |
|
|
| T |
24003638 |
taaaccatcaaacataacttgaatgttaaaataatgcagagcttttgaacaacaaaaacacactcataaaagaagaaatagtgtgagttattgaac |
24003733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 440 - 499
Target Start/End: Original strand, 23939530 - 23939589
Alignment:
| Q |
440 |
tgttggaagaagacatctcattattgtgagtctcaatctcaatctctaatttcttctcac |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |
|
|
| T |
23939530 |
tgttggaagaagacatctcattattgtgagcctcaatctcaatttctaatttcttgtcac |
23939589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 3576750 - 3576798
Alignment:
| Q |
243 |
aaaccatcaagcataacttgactgttaaaataatgtagagcttttgaac |
291 |
Q |
| |
|
|||| ||||||||||||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
3576750 |
aaacaatcaagcataacttggttgttaaactaatgtaaagcttttgaac |
3576798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University