View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_low_14 (Length: 502)
Name: NF17034_low_14
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 37957382 - 37957796
Alignment:
| Q |
1 |
aatattgtgtattttgttcttcttttctcatcttttattttaggcatgtggtaatatcagttttctttcattatcttattatatgcatatgtaattttat |
100 |
Q |
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| T |
37957382 |
aatattgtgtattttgttcttcttttctcatcttttattttaggcatgtggtaatatcagttttcttccattatcttattatatgcatatgtaattttat |
37957481 |
T |
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| Q |
101 |
tatttcaaaaatcctcttacaccaattcttttgtgaggggatggtcatagtaattagaagcaaactagtattttacttttgacataaaatcaagaaagct |
200 |
Q |
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| T |
37957482 |
tatttcaaaaatcctcttacaccaattcttttgtgaggggatgttcatagtaattagaggcaaactagtattttacttttgacataaaatcaagaaagct |
37957581 |
T |
|
| Q |
201 |
aaatgtatttaactatgaatatcaatttactttgaaggttttggtgacaaaggagataaagaagcaaattaatgcagtgaaattgatgttgggctcgatg |
300 |
Q |
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| T |
37957582 |
aaatgtatttaactatgaatatcaatttactttgaaggttttggtgacaaaggagataaagaagcaaattaatgcagtgaaattgatgttgggctcgatg |
37957681 |
T |
|
| Q |
301 |
gaagatggagagataaccatatcagcttatgacacagcttgggttgctctcataaaaaatgttgatgatgagaatacaccacagtttccatcttctcttg |
400 |
Q |
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| T |
37957682 |
gaagatggagagataaccatatcagcttatgacacagcttgggttgctctcataaaaaatgttgatgatgagaatacaccacagtttccatcttctcttg |
37957781 |
T |
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| Q |
401 |
aatggattgtcaata |
415 |
Q |
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| T |
37957782 |
aatggattgtcaata |
37957796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 3184822 - 3184770
Alignment:
| Q |
298 |
atggaagatggagagataaccatatcagcttatgacacagcttgggttgctct |
350 |
Q |
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| T |
3184822 |
atggaagatggagagataactatatctgcttatgatactgcttgggttgctct |
3184770 |
T |
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